Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120809.seq
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               29   2.5  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         28   5.7  
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)              28   5.7  
SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 262 YLYRLICKHCGTRRRECYRHC 200
           YLY+ +C H  + + EC+R C
Sbjct: 174 YLYKALCCHKNSHKTECFRAC 194


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 499 KYSVSGFQLFKGSSIPLLSPNTELRSFEPAPQSVCGTTLCLIRS 368
           +Y VSG Q +      +LS N + +S    P +  GTTL  + S
Sbjct: 733 EYDVSGLQAYARYLFRVLSCNVKDKSLLSEPANATGTTLATVPS 776


>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
          Length = 325

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 115 PAVRSHGYLSLPTARQY 165
           P +  HGYLS+P AR Y
Sbjct: 15  PHISGHGYLSIPPARNY 31


>SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 243 QISLYKYRALDL-ESGAAAATAQYMFQQYMEYASVAGP 353
           Q+ L+K R + + +SG   ++ +  F  YM++A V+ P
Sbjct: 271 QLKLHKLREVTIADSGVVDSSVKSWFDDYMDWAKVSKP 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,522,624
Number of Sequences: 59808
Number of extensions: 441337
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)