Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120808.seq
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    28   1.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   1.7  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.2  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    27   3.0  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   5.2  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.2  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   5.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.0  

>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/69 (23%), Positives = 24/69 (34%)
 Frame = +2

Query: 53  SVMSSQSDLWPRTSPAVXNM*IVNGQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRATRC 232
           +    +  +W    PA  N  IVN    S  +      L    K S +++        RC
Sbjct: 453 AAQEGRKGMWSGKKPAYEN--IVNASESSLRSRQYLSSLQRTRKLSVIIENVISGSRFRC 510

Query: 233 ICTXTQCYY 259
            C    CY+
Sbjct: 511 FCPKENCYF 519


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 243 THSAITKSGVIQLIMKSKLPYAIELQEWLL 332
           T   + K GV+ L+ K KLP+++  ++ ++
Sbjct: 539 TRDLLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
 Frame = -3

Query: 626 AYHVLAANVPPMR--FGPSCAVFAARVFPNLAEP------VSASRRAKSFRWQTNERTGW 471
           A +V   N+PP    F PS +  +  V PN  +       +S S  A + + Q++  +  
Sbjct: 365 APYVYRNNLPPSATSFQPSSSR-SPSVDPNTVKSAQHIPRMSPSPSASALKTQSHVPSAK 423

Query: 470 LPPKSALAHRQIFAFRSSILA 408
           +PP S L H Q+   +S I+A
Sbjct: 424 VPPTSKLNHAQLAMLKSQIVA 444


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 231 VFAPTHSAITKSGVIQLIMKSKLPYAIELQEWLLEEVI 344
           +F+P+   I ++G+ + +M+S   +   +Q  LLE V+
Sbjct: 287 LFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVV 324


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 511 PNHFVGKQMSEP-VGFRPNLRWPTVKF-LRSDRQFW 410
           P+ F+G  +++  +G+ P+ +WP  KF L +  Q W
Sbjct: 299 PHDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTW 334


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 116 IVNGQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRAT 226
           I  G Y STS +ST+   + P+ SST    +  S +T
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSST 165


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 55  GDEQPVRFVAKDIASSXKYVNCERAIRVHVDGKYKSTFEHAD 180
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 170 SMPTKSSTMLQIAWQSRATRCICTXTQCYYQ 262
           ++PT  +  L+IA    + +C+CT   C YQ
Sbjct: 146 NLPTFVNNCLRIA---ESGKCLCTVCSCLYQ 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,092
Number of Sequences: 5004
Number of extensions: 52864
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)