Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120808.seq
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0040 + 17429281-17429371,17429433-17430150,17431387-174314...    29   2.3  
07_03_0758 - 21292205-21293329                                         29   3.0  
07_01_0245 - 1803170-1803887,1803971-1804641                           29   3.0  
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774...    29   3.0  
07_03_0761 - 21314806-21315144,21315267-21315417,21315509-213157...    28   7.0  
04_03_0116 - 11448012-11448525,11448693-11448763,11449139-114494...    28   7.0  
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    27   9.3  

>05_04_0040 +
           17429281-17429371,17429433-17430150,17431387-17431435,
           17431540-17431785,17432266-17432673
          Length = 503

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 527 KRVXQDLEKRAPRKRR--NLGQTALAGHLPPRR 619
           KR+ +  EK+APRKR+     Q+ L  H  PRR
Sbjct: 347 KRIKKSKEKKAPRKRKCGKCKQSLLFRHYSPRR 379


>07_03_0758 - 21292205-21293329
          Length = 374

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 586 LAQVAPFSRRAFFQILXNPFQRRVEPNHFVGKQMSEPVGFRPNLRWPTVKF 434
           LAQ  P    A  +       RR+ P +FVGK      G R N R+   +F
Sbjct: 227 LAQCTPDMSEADCRSCLGDIIRRMMPKYFVGKPGGRVFGVRCNFRFEAYEF 277


>07_01_0245 - 1803170-1803887,1803971-1804641
          Length = 462

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 256 IALCVGANTAGRPALPRYLEHGAGFGRHAQTSICTCRRRGHVLP 125
           + + VG  +   P  PR    GAG G H  TS C C+ R + LP
Sbjct: 7   VRVLVGNLSLKMPVAPR--PAGAGAGVHPSTSPCYCKIRLNKLP 48


>04_04_1568 -
           34475707-34476822,34476894-34477083,34477330-34477464,
           34477571-34477668,34477789-34477979,34478784-34479286,
           34480169-34481568,34481655-34481855
          Length = 1277

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 631 FGLITSWRQMSRQCGLAQVAPFSRR 557
           F L+TSW ++  + G+A V PF+R+
Sbjct: 659 FFLLTSWTKLLDKAGVASVRPFTRQ 683


>07_03_0761 -
           21314806-21315144,21315267-21315417,21315509-21315746,
           21315873-21316083,21316585-21316715,21317112-21317249,
           21320183-21321071
          Length = 698

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -1

Query: 586 LAQVAPFSRRAFFQILXNPFQRRVEPNHFVGKQMSEPVGFRPNLRWPTVKF 434
           LAQ  P    A  +       R+  P +FVGK      G R N R+   +F
Sbjct: 220 LAQCTPDMSEADCRSCLGDIIRKATPKYFVGKPGGRVFGVRCNFRFEAYEF 270


>04_03_0116 -
           11448012-11448525,11448693-11448763,11449139-11449421,
           11449520-11449672,11449750-11450219,11451470-11451631,
           11451718-11451987,11452229-11452633
          Length = 775

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 548 PNLAEPVSASRRAKSFRWQTNERTGWLPPKSALAHRQIFAFRS 420
           P  +     SR+    R + +  TGWLP  + LAH  I  F S
Sbjct: 621 PQTSGSRKGSRKGCEPRTRGSSFTGWLPQVAILAHASIGTFLS 663


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 588 VWPKLRRFRGARFSKSCXTRFSVASSQIISLANK*ANR 475
           VW +L RF GA+       RF  A SQ+   +N    R
Sbjct: 29  VWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKR 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,139
Number of Sequences: 37544
Number of extensions: 391631
Number of successful extensions: 1170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)