Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120808.seq
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL137227-9|CAE17839.1|  220|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical
           protein T13H5.8 protein.
          Length = 566

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 184 IQHHAPDSVAKQGDPLYLHXHTVLLPN 264
           +Q   P SVAK G   YL+ HT+LLP+
Sbjct: 91  LQVKIPSSVAKDG---YLYAHTILLPH 114


>AL137227-9|CAE17839.1|  220|Caenorhabditis elegans Hypothetical
           protein F58D5.9 protein.
          Length = 220

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 600 PANAVWPKLRRFRGARFSKSCXTRFSVASSQIISLANK--*ANRLASAQICVGPPS 439
           P+ A WPK++  +    SK    RF     +   LA +   A RL + ++C+  PS
Sbjct: 60  PSTADWPKMKFGQDYEHSKCPDARFQRHVEENCQLAEQYIAAGRLLAFEVCMVTPS 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,154,401
Number of Sequences: 27780
Number of extensions: 313702
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)