Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120807.seq
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   3.1  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.1  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   5.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   7.2  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -3

Query: 443 HDNNIFFIMPSKTNAVIIYLFKLDTEHPPTYNV----NAKTRLVSGYENSRPIN 294
           HD  +F  +     A +IY+F   TE    Y V       T + + YE + P++
Sbjct: 769 HDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEVAAAYELNEPVD 822


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 524 TIVSPQCQLATETIFNMNVNLYCPNGEHDNNIF 426
           +I SP C   +  +FN  VN +  NG+ + +IF
Sbjct: 385 SITSPLCLNTSSIVFNATVN-FTRNGKFNTSIF 416


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 323 SGYENSRPININLRSITPSLNG 258
           +G +  + I+INL  +TPSLNG
Sbjct: 333 TGAKYDQIIDINLSELTPSLNG 354


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 120 DKMCHTCSSACVRVTTNPNGAVY 188
           DK  +T SSA    TTNP+G+ +
Sbjct: 119 DKSKNTASSATGAATTNPSGSTF 141


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +1

Query: 244 VRSSVPFKDGVIDL----RLIFIGRLFSYPLTKRVFALTLYVGG-CSVSNL 381
           + S  P ++ + +L      +F GRL + P+ +  FAL + +GG  + SN+
Sbjct: 467 ILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNV 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,056
Number of Sequences: 5004
Number of extensions: 53425
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)