Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120807.seq
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203...    29   3.2  
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630...    29   4.2  
01_01_1217 + 9830435-9830770                                           28   5.6  
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    28   7.4  

>06_03_1277 +
           28918140-28918279,28919552-28919761,28920179-28920374,
           28920459-28920853,28921024-28921119,28921330-28921402,
           28921650-28921935,28923824-28923946,28924123-28924404,
           28924513-28924928
          Length = 738

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 374 DTEHPPTYNVNAKTRLVSGYENSRPININLRSITPS-LNGTE 252
           D EH    N+   T   S     RP ++N+ SIT S L GT+
Sbjct: 614 DVEHSEVSNITGSTCSSSSKVQQRPYDLNIPSITISQLRGTQ 655


>03_06_0646 +
           35260497-35262371,35262500-35262683,35262906-35263007,
           35263101-35263231,35263315-35263584,35263765-35263943,
           35264229-35264275,35264452-35264541,35264596-35264645,
           35264673-35264725,35264886-35265009,35265094-35265369,
           35265460-35265593,35265672-35265758,35265864-35265977,
           35266180-35266309
          Length = 1281

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/102 (20%), Positives = 43/102 (42%)
 Frame = +1

Query: 265 KDGVIDLRLIFIGRLFSYPLTKRVFALTLYVGGCSVSNLNK*MITALVLEGIIKKILLSC 444
           +DG ++  L   G + S  +    FAL++ +G C    L + +  + +   +I  I +S 
Sbjct: 218 RDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSN 277

Query: 445 SPLGQYKLTFMLNIVSVAS*HCGDTIVNNQTTMTQINFNASY 570
           + L  Y  T ++  +        +  + + TT    NF   +
Sbjct: 278 ALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGF 319


>01_01_1217 + 9830435-9830770
          Length = 111

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 11  PTLSLNPWRR--ICRVRCPCALDARNGPCAFGFKGFA 115
           P L   PW    +CR   PC + + +G    G  GFA
Sbjct: 20  PLLPTPPWHSGVVCRTTTPCRVPSVHGGSCVGGSGFA 56


>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 560 LKLICVIVVWLFTIVSPQCQLATETI 483
           L+   ++V  LF+I SP C  AT+TI
Sbjct: 2   LRTFIILVPLLFSIHSPACSAATDTI 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,132
Number of Sequences: 37544
Number of extensions: 341813
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)