Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120807.seq
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)                 30   1.9  
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)               28   5.7  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_10367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         28   7.6  

>SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
          Length = 412

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = -3

Query: 230 FGAAPLSRFIYIQQVHCAVGICGNAHTSRAASVAHFVCAQNL*SQKHKVRYGHLAHTDNG 51
           F + P  R  Y Q+        GN + +R  +   +  +Q+   Q  K+ YG+  HT+N 
Sbjct: 22  FNSNPQFRPHYYQEASEERNFQGN-YLARPPNSTRYGSSQDARCQADKMGYGNETHTNNY 80

Query: 50  PDKFYAKDLMIMSGN 6
            D   +++ +I S N
Sbjct: 81  QDSLSSENCVIRSQN 95


>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1269

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = -2

Query: 243 VISCIRRRAFIEIYLHTTSTLRRWDLW*RAHKQSCKCGTFCLCAKPL 103
           + +C+ R   +++      T R +    R   ++C C   C C +P+
Sbjct: 9   IATCVLRTELLQLKQERDETFRAFAARVRGKAETCACTAACACGQPV 55


>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 102 SKVLRTDKMCHTCSSACVRVTTNPNGAVYLLYVNKS 209
           S++L T ++  T S     V+++PN +V LLY  K+
Sbjct: 278 SEILHTSQIYETISINVTAVSSSPNASVSLLYETKA 313


>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
          Length = 1001

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 117 CAKPLKPKAQGPLRASSAHGQR--TRQILRQG 28
           C KP+K +  G   +S++ GQR  TR  L QG
Sbjct: 159 CVKPIKSRGGGARDSSTSRGQRSQTRSALLQG 190


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 44   CRVRCPCALDARNGPCAFGFKGFAHRQNVPHLQLCLCARYHKSQR 178
            C +R  CAL + NGP  F   G     N P    C CAR    +R
Sbjct: 4433 CEIRDFCALASVNGPACFN-GGVC--TNTPTSYTCTCARGFHGRR 4474


>SB_10367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/72 (19%), Positives = 31/72 (43%)
 Frame = -3

Query: 419 MPSKTNAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRPININLRSITPSLNGTEERT* 240
           MP      ++ +  +D +H P  N NA+TR  +  E  R +    R+    +   ++   
Sbjct: 213 MPQTRGQKLLEMCGVDIQHQPPTNTNAQTRAKASTEKYRSLPEVSRTELTVIKDVKKEIG 272

Query: 239 SAAFGAAPLSRF 204
             ++G   + ++
Sbjct: 273 EGSYGTCQIKQY 284


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 220 RLYRDLFTYNKYTAPLGFVVTRTQAELQVWHILSVRKTFE 101
           +++ +  TY +YT PLG++ T    +   W   S+ KT+E
Sbjct: 358 QIFYEPLTYGQYTDPLGYIYTIADKQYLRWANDSM-KTYE 396


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 44   CRVRCPCALDARNGPCAFGFKGFAHRQNVPHLQLCLCAR 160
            C +R  CAL + NGP  F   G     N P    C CAR
Sbjct: 2649 CEIRDFCALASVNGPACFN-GGVC--TNTPTSYTCTCAR 2684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,851,150
Number of Sequences: 59808
Number of extensions: 439675
Number of successful extensions: 1049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)