Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120807.seq
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 28 6.6
U64857-14|AAL16313.1| 402|Caenorhabditis elegans Hypothetical p... 28 6.6
U64857-13|AAC25859.2| 436|Caenorhabditis elegans Hypothetical p... 28 6.6
U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical p... 28 6.6
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 27 8.7
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 27 8.7
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 636 VLSQNSE*PLSNDARDGVGSTGVRRVKINLRHSRLVVHDRVAAMSTCN*NNI 481
+++ NS L + + +G +GVR + LRH V ++AM N NN+
Sbjct: 312 LITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWN-NNV 362
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 636 VLSQNSE*PLSNDARDGVGSTGVRRVKINLRHSRLVVHDRVAAMSTCN*NNI 481
+++ NS L + + +G +GVR + LRH V ++AM N NN+
Sbjct: 312 LITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWN-NNV 362
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 636 VLSQNSE*PLSNDARDGVGSTGVRRVKINLRHSRLVVHDRVAAMSTCN*NNI 481
+++ NS L + + +G +GVR + LRH V ++AM N NN+
Sbjct: 312 LITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWN-NNV 362
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 636 VLSQNSE*PLSNDARDGVGSTGVRRVKINLRHSRLVVHDRVAAMSTCN*NNI 481
+++ NS L + + +G +GVR + LRH V ++AM N NN+
Sbjct: 312 LITSNSSLQLLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWN-NNV 362
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical protein
ZK970.5 protein.
Length = 1143
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 362 PPTYNVNAKTRLVSGYENSRPININLRSITP 270
PP VN K R ++ + +S N + RS++P
Sbjct: 1087 PPITKVNHKPRKIASFTDSELTNYSFRSVSP 1117
>U64857-14|AAL16313.1| 402|Caenorhabditis elegans Hypothetical
protein C37C3.2b protein.
Length = 402
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 506 CQLATETIFNMNVNLYCPNGEHDNN 432
C+L +T F+ Y NGEHD N
Sbjct: 59 CELGAQTNFDAKNERYIVNGEHDAN 83
>U64857-13|AAC25859.2| 436|Caenorhabditis elegans Hypothetical
protein C37C3.2a protein.
Length = 436
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 506 CQLATETIFNMNVNLYCPNGEHDNN 432
C+L +T F+ Y NGEHD N
Sbjct: 59 CELGAQTNFDAKNERYIVNGEHDAN 83
>U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical
protein C37C3.2c protein.
Length = 413
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 506 CQLATETIFNMNVNLYCPNGEHDNN 432
C+L +T F+ Y NGEHD N
Sbjct: 59 CELGAQTNFDAKNERYIVNGEHDAN 83
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 5 RCPTLSLNPWRRICRVRCPCALD 73
RC L L+ WR++C+ C C +D
Sbjct: 49 RCEGLDLHFWRKMCK-NCGCRMD 70
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +3
Query: 135 TCSSACVRVTTNPNGAVYLLYVNKSR*RRGAECS*SRTLLCPVQGRCYRPQINIYRPTVF 314
TC +AC TNPN +N R T C Q +C RP T F
Sbjct: 46 TCGTACEPSCTNPNPMCTKQCINNVCQCRSGYVRNEITRQCVRQAQCSRPGTGFGSSTPF 105
Query: 315 VS-AHQTC 335
S + Q C
Sbjct: 106 PSQSPQRC 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,133,153
Number of Sequences: 27780
Number of extensions: 317448
Number of successful extensions: 816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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