Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120807.seq
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 192 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPKAQGPLRAS 70
           T  + RW  W     + CK  T    ++ ++PK    L  S
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKS 422


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 192 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPKAQGPLRAS 70
           T  + RW  W     + CK  T    ++ ++PK    L  S
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKS 422


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 192 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPKAQGPLRAS 70
           T  + RW  W     + CK  T    ++ ++PK    L  S
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKS 422


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 391 MITALVLEGIIKKILLSCSPLGQYKLTFMLN 483
           ++TAL+  G +KK  L  S +   K+  M N
Sbjct: 336 LVTALIQRGTLKKGCLLVSGIASAKVRSMFN 366


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 92   HKVRYGHLAHTDNGPDK 42
            HKV     A+T  GPDK
Sbjct: 1670 HKVALQQAANTGGGPDK 1686


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 92   HKVRYGHLAHTDNGPDK 42
            HKV     A+T  GPDK
Sbjct: 1666 HKVALQQAANTGGGPDK 1682


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 146 CLCARYHKSQRRSVLVVCK*ISIKARRRMQLITYAPL 256
           C+C +    +  SV + C       ++  ++IT APL
Sbjct: 75  CMCCQESGEREASVSLFCPRAKPGEKKFRKVITKAPL 111


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 241 DQLHSAPRLYRDLFTYNKYTAPLGFV 164
           D LHS   +YRDL   N      G+V
Sbjct: 480 DYLHSRNIIYRDLKPENLLLDSQGYV 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,559
Number of Sequences: 438
Number of extensions: 3736
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)