Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120807.seq
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06330.1 68418.m00709 hairpin-responsive protein, putative (H...    31   0.88 
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    29   2.7  
At4g14103.1 68417.m02177 F-box family protein contains F-box dom...    29   2.7  
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f...    27   8.2  
At1g33250.1 68414.m04110 fringe-related protein + weak similarit...    27   8.2  

>At5g06330.1 68418.m00709 hairpin-responsive protein, putative
           (HIN1) similar to harpin-induced protein hin1 (
           GI:1619321) [Nicotiana tabacum]
          Length = 207

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
 Frame = -3

Query: 560 LKLICVIVVWLFTIVS-PQCQLATETIFNMNVNLYCPNGEHDNNIFFIMPSKTNAVI-IY 387
           L L+ +++VW     S P+  L   T+FN NV+   PN    N  F +     N  I IY
Sbjct: 30  LILVVILLVWAILQPSKPRFVLQDATVFNFNVSGNPPNLLTSNFQFTLSSRNPNDKIGIY 89

Query: 386 LFKLDT-EHPPTYNVNAKTRLVSGYENSRPINI 291
             +LD      +  +   + +++ Y+  + +N+
Sbjct: 90  YDRLDVYASYRSQQITLPSPMLTTYQGHKEVNV 122


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 216 FIEIYLHTTSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPKAQGPLRASSAHGQRTRQIL 37
           +++ Y  TT    R D W   +  S   G+F +C + L     GP  AS++   R  ++L
Sbjct: 255 YMQTYAPTTLAPAR-DFWTLRYTTSLDNGSFVVCERSLSGSGAGPNAASASQFVRA-EML 312

Query: 36  RQGF 25
             G+
Sbjct: 313 SSGY 316


>At4g14103.1 68417.m02177 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 381

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 153 HKQSCKCGTFCLCAKPLK 100
           HK + +CG  CLC KP K
Sbjct: 359 HKATYRCGDVCLCKKPRK 376


>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
           factor (HB-8) identical to HD-zip transcription factor
           (athb-8) (GI:7270235) [Arabidopsis thaliana]
          Length = 833

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 216 FIEIYLHTTSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPKAQGPLRASSAHGQRTRQIL 37
           ++++Y  TT    R D W   +    + G+  +C + L     GP    S H  R  +IL
Sbjct: 254 YMQLYAPTTLAPAR-DFWMLRYTSVMEDGSLVICERSLNNTQNGPSMPPSPHFVRA-EIL 311

Query: 36  RQGF 25
             G+
Sbjct: 312 PSGY 315


>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 548

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 641 LLFYHKTLNSRCRTTLGTASEALVYDAL--KLIC 546
           +LF+ K +      TLGT S +LV D L  KL+C
Sbjct: 452 ILFFLKEVGQEGNATLGTYSRSLVKDDLKTKLLC 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,511
Number of Sequences: 28952
Number of extensions: 275592
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)