Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120806.seq
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7; Endoptery...    39   0.12 
UniRef50_Q47GM2 Cluster: Glycosyl transferase, group 1; n=1; Dec...    34   2.6  
UniRef50_Q61WD4 Cluster: Putative uncharacterized protein CBG044...    34   3.4  
UniRef50_Q6K6K1 Cluster: Putative uncharacterized protein P0047E...    33   7.8  

>UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7;
           Endopterygota|Rep: Nucleoplasmin isoform 2 - Bombyx mori
           (Silk moth)
          Length = 187

 Score = 38.7 bits (86), Expect = 0.12
 Identities = 21/45 (46%), Positives = 21/45 (46%)
 Frame = +1

Query: 4   HELLGAXXXXXXXXXXXXXXXXXXXXXXXSQFKEDENKRKGAGKR 138
           H LLGA                       SQFKEDENKRKGAGKR
Sbjct: 106 HHLLGALLEEFEDMEEMEEEMLDEEEGDDSQFKEDENKRKGAGKR 150


>UniRef50_Q47GM2 Cluster: Glycosyl transferase, group 1; n=1;
           Dechloromonas aromatica RCB|Rep: Glycosyl transferase,
           group 1 - Dechloromonas aromatica (strain RCB)
          Length = 398

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 275 KMGLQAVVHFLAFFLGDAALPLALFDIFA 189
           ++GLQ  +HFL  + GD A  LA FDI+A
Sbjct: 269 ELGLQDRIHFLGHYTGDIATLLASFDIYA 297


>UniRef50_Q61WD4 Cluster: Putative uncharacterized protein CBG04463;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG04463 - Caenorhabditis
           briggsae
          Length = 226

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 176 PRAKKRKCRIMPKAKLHRPRRMPRNEQPPGDP 271
           P+AKK+K   +P  K+HR + +P +E+ P  P
Sbjct: 4   PKAKKQKLPFVPIPKVHRVQEIPAHERDPSPP 35


>UniRef50_Q6K6K1 Cluster: Putative uncharacterized protein
           P0047E05.22; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0047E05.22 - Oryza sativa subsp. japonica (Rice)
          Length = 236

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 19/79 (24%), Positives = 38/79 (48%)
 Frame = +2

Query: 92  LSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQPPGDP 271
           LS  + +++E+ +    R + K  KK   + KK+K +   K K  + ++  +     G P
Sbjct: 90  LSQIECQVQERHERRRRRRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKSSQGTGISGTP 149

Query: 272 FWASRTVAILGIIISKLCR 328
            WA+ + + +  +   LCR
Sbjct: 150 MWAASSSSSMQHLF-LLCR 167


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,294,897
Number of Sequences: 1657284
Number of extensions: 8353466
Number of successful extensions: 19703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19577
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)