Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120806.seq
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    21   6.7  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   6.7  
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    21   6.7  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   6.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = -2

Query: 418  SSNHARVDTMLTYAELPH*VVITSWVVAPSPAQFRYNYT*NGDGTTSPKWVS 263
            +  + R    L Y E+ H +    W V   P +    Y   GD     +WVS
Sbjct: 1667 AGEYTRAAGFLAYYEICHNIKTQGWTVVQDPNRRMGPYAYKGD-----QWVS 1713


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 1   MQIFVKTLTGKTIT 14


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 1   MQIFVKTLTGKTIT 14



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 77  MQIFVKTLTGKTIT 90



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 153 MQIFVKTLTGKTIT 166



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 229 MQIFVKTLTGKTIT 242



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 305 MQIFVKTLTGKTIT 318



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 381 MQIFVKTLTGKTIT 394



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 457 MQIFVKTLTGKTIT 470



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 533 MQIFVKTLTGKTIT 546



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 609 MQIFVKTLTGKTIT 622


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 1   MQIFVKTLTGKTIT 14


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 483 MNKFADTLTGRTIT 442
           M  F  TLTG+TIT
Sbjct: 49  MQIFVKTLTGKTIT 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,042
Number of Sequences: 336
Number of extensions: 2231
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)