Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120806.seq
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.44 
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   4.1  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   9.5  

>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 83  EMILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKR 193
           E +L+ RK R+KE+ +    +   K  KK   R KK+
Sbjct: 130 EALLAERKQRLKEQREKKEQKKEQKKEKKTERRKKKK 166


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 KLHRPRRMPRNEQPPGDPFWASRTVAILG 304
           +L  P+R+P +E  P   FW S +  ++G
Sbjct: 202 RLEPPKRLPNDEIFPYQLFWQSESRLVIG 230


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 286 TTSPKWVSR-RLFISWHSSWAMQLCLWHYSTFSLFCPWVHLLHYL 155
           T   KW+ R R   S   + AM   LW         PW +LLH++
Sbjct: 263 TDGSKWMGRLRNSKSLMKNLAMARDLWSCGWKQTAFPWSNLLHHI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,579
Number of Sequences: 5004
Number of extensions: 34122
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)