Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120806.seq
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0883 + 28483429-28484385,28485090-28485398                       28   5.6  
05_04_0035 + 17378541-17381276                                         28   7.4  
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527...    27   9.8  

>03_05_0883 + 28483429-28484385,28485090-28485398
          Length = 421

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 104 KMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQPPGDP 271
           + R K + +  A ++R ++ K    +  + K R + +A    P  +PR++ PP  P
Sbjct: 344 RYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRAAALPPLPLPRHQHPPPPP 399


>05_04_0035 + 17378541-17381276
          Length = 911

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 179 RAKKRKCRIMPKAKLHRPRRMPRNEQPPGDP 271
           R +KR+ RI P   LH  RR P    PP DP
Sbjct: 69  RRRKRRLRIEPP--LHALRRDPSAPPPPRDP 97


>02_01_0706 +
           5270233-5270326,5270767-5270914,5271018-5271089,
           5271153-5271263,5271363-5271434,5271533-5271604,
           5272126-5272197,5272281-5272346,5272426-5272491,
           5272601-5272971,5273203-5273456,5273886-5274157,
           5274333-5274474,5275174-5275313,5275381-5275537,
           5275797-5275965,5276048-5276088
          Length = 772

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 351 LAGWSHPRLHNLDIIIPKMATVRLAQNGSPGGCSFLGILLGRC 223
           L  W+ P LHNLD  + ++   R+  +  P   S LG ++  C
Sbjct: 660 LVDWASPHLHNLD-SLERITDPRIHASMPPQAISTLGNIILLC 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,138,313
Number of Sequences: 37544
Number of extensions: 241061
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)