Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120806.seq
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              32   0.47 
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   31   0.81 
SB_31838| Best HMM Match : CXCXC (HMM E-Value=0.7)                     28   5.7  
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 89   ILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQ 256
            +L  ++ R KEK++        K  +K   RAKK K R++ + KLH      R ++
Sbjct: 942  LLIEKEKREKEKQKERLREKEEKEKQKEAERAKKEKERLLQEDKLHEKEEKDRKDK 997


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +2

Query: 83  EMILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAK 220
           E IL  R+   +E+E+ + + +R +++ K NP A+ +  +I+P  K
Sbjct: 722 EAILRQREEEREEEERRNIAMLRQQMVHKANPIARFKGVQILPSEK 767


>SB_31838| Best HMM Match : CXCXC (HMM E-Value=0.7)
          Length = 346

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 176 PRAKKRKCRIMPKAKLHRPRRMPRNEQPPGDPFWASR 286
           PR  +    ++PK++   P R PR+  P   PF A +
Sbjct: 57  PRRPENMGMVVPKSRSVSPTRRPRSASPTRPPFKAGK 93


>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 235 SWAMQLCLWHYSTFSLFCPWVHLLHYLHPHSACASLLLF 119
           SW M + +WH   F+        LH L+ H  C S L F
Sbjct: 579 SWDMTIMVWHIVKFT-------RLHVLYGHKGCVSCLRF 610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,959,744
Number of Sequences: 59808
Number of extensions: 274462
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)