Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120806.seq
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    31   0.54 
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      28   5.0  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.0  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.0  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +2

Query: 101 RKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRR 238
           RK + +++++  A R+R K+ K+   R KKR+ R + +A+  + RR
Sbjct: 860 RKAKKRKRDEEEAERLREKVRKREERREKKRR-RAIRRAEREKQRR 904


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 167 KVNPRAKKRKCRIMPKAKLHRPRRMPRNEQPPGDPFWASRTVAILG 304
           K N   ++   R +P A+  RPR +P+   PPG    A+  +A  G
Sbjct: 42  KKNFETREGVYRSVPSAEFSRPRPLPQYHMPPGIASAAASQIAAAG 87


>AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 280 SPKWVSRRLFISW-HSSWAMQLCLWHYSTFSLFCPWVHLLHYLHPHSACASLLLFFYSH 107
           +P +  +     W H+S    LC +   +  +F   VHL+H   P    A  +L F SH
Sbjct: 4   NPFYFQKENIAKWNHTSSLKNLCTFRRRSIQVFQKIVHLVHLQTPFLLKALRILTFLSH 62


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 209 PKAKLHRPRRMPRNEQPPGDPFWASRTV 292
           P+A   R    P+ E+PP +P W  +T+
Sbjct: 132 PEASQQREPTPPKPEEPPNEPTWLDKTI 159


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 244 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 155
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 244 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 155
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 244 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 155
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 244 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 155
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 244 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 155
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 235 SWAMQLCLWHYSTFSLFCPWVHLLHY 158
           SWA+ +C+   STF+L C    +LHY
Sbjct: 80  SWALLVCIIE-STFALICFLAVMLHY 104


>AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical
           protein F53H1.4b protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +2

Query: 86  MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQ 256
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+
Sbjct: 193 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEE 249


>AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical
           protein F53H1.4c protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +2

Query: 86  MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQ 256
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+
Sbjct: 229 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEE 285


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +2

Query: 86  MILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQ 256
           +ILSSR+++ K+KE+    + +++  +K     K++K     K    +  ++   E+
Sbjct: 229 VILSSRRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEE 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,024
Number of Sequences: 27780
Number of extensions: 196638
Number of successful extensions: 470
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)