Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120804.seq
         (530 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q06906 Cluster: Occlusion-derived virus envelope protei...    80   4e-14
UniRef50_Q77K60 Cluster: Odv-e25; n=26; Baculoviridae|Rep: Odv-e...    57   3e-07
UniRef50_Q7T9T8 Cluster: Odv-e25; n=2; Granulovirus|Rep: Odv-e25...    43   0.004
UniRef50_Q9C754 Cluster: Putative uncharacterized protein F12P21...    35   1.0  
UniRef50_Q4N3P4 Cluster: Serine/threonine protein phosphatase; n...    34   1.8  
UniRef50_A0DBE4 Cluster: Chromosome undetermined scaffold_44, wh...    33   3.1  
UniRef50_UPI000150A9D8 Cluster: SNF7 family protein; n=1; Tetrah...    32   7.2  
UniRef50_Q9MC43 Cluster: Orf89; n=1; Pseudomonas phage D3|Rep: O...    32   7.2  
UniRef50_Q4T8A4 Cluster: Chromosome undetermined SCAF7858, whole...    32   9.5  

>UniRef50_Q06906 Cluster: Occlusion-derived virus envelope protein
           E25; n=14; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E25 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 229

 Score = 79.8 bits (188), Expect = 4e-14
 Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
 Frame = +3

Query: 66  WTNA-LNLNSLTEASXSLGQXXESVESD-EXKRLNVKLNNARVANLRIAHGDNKLSQMYI 239
           W N  LNLNSLTE+S SL Q  +SV+ D + ++LNVKL N ++  +R+AHGDNK+SQ+Y+
Sbjct: 18  WYNGKLNLNSLTESSPSLAQSSDSVQVDPQTEQLNVKLGNNKMTYMRVAHGDNKVSQVYV 77

Query: 240 AEKPLL*TT*SKRAPTKWALTAFFWAPYTTMELNRXTRPAHLVMXPXRAAPQTLISRNLX 419
           AEKP+      K+   +    + F        +     P                 +   
Sbjct: 78  AEKPMSMDDIEKQGNARVGANSLFIGTVYDQGVRSPNAPGASNDVTVTRTTANFDVKEYK 137

Query: 420 SMXIVFKGITPTK 458
           +M IV KG+ P K
Sbjct: 138 NMFIVVKGLPPAK 150



 Score = 77.0 bits (181), Expect = 3e-13
 Identities = 33/57 (57%), Positives = 45/57 (78%)
 Frame = +2

Query: 245 KTATIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVXXTRGTANFDIKEF 415
           K  ++DDI K+G+ +VG NS+F+GTVYD GV+SPNA   S++V  TR TANFD+KE+
Sbjct: 80  KPMSMDDIEKQGNARVGANSLFIGTVYDQGVRSPNAPGASNDVTVTRTTANFDVKEY 136


>UniRef50_Q77K60 Cluster: Odv-e25; n=26; Baculoviridae|Rep: Odv-e25
           - Helicoverpa armigera NPV
          Length = 230

 Score = 56.8 bits (131), Expect = 3e-07
 Identities = 26/61 (42%), Positives = 41/61 (67%)
 Frame = +3

Query: 72  NALNLNSLTEASXSLGQXXESVESDEXKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKP 251
           N LN +SL ++S   GQ  ES+  +   +L +K N+ R+  +RI HGDNK+S++ +AE+P
Sbjct: 22  NKLNFDSLNDSS---GQSSESIRENNQGQLTLKFNSPRIKTMRILHGDNKISKVCVAERP 78

Query: 252 L 254
           L
Sbjct: 79  L 79



 Score = 38.3 bits (85), Expect = 0.11
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +2

Query: 254 TIDDIVKEGSNKVGTNSIFLGTVYDYGVKS--------PNAASTSSNVXXTRGTANFDIK 409
           T  +I+ EG+  VG N +F+GT+ +    S          +A +S      R TANFDIK
Sbjct: 80  TYSEIIDEGNRTVGANCVFMGTISEPSQTSTLNQQQQQQQSAGSSLPTTANRVTANFDIK 139

Query: 410 EF 415
           +F
Sbjct: 140 QF 141


>UniRef50_Q7T9T8 Cluster: Odv-e25; n=2; Granulovirus|Rep: Odv-e25 -
           Adoxophyes orana granulovirus (AoGV)
          Length = 217

 Score = 43.2 bits (97), Expect = 0.004
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 66  WTN-ALNLNSLTEASXSLGQXXESVESDEXKRLNVKLNNARVANLRIAHGDNKLSQMYIA 242
           W N  LN NSL  +S S G   +S++       NV  NN +  N+RIA+G+N  S++   
Sbjct: 19  WVNDKLNANSLNTSSESSG---DSIQFTPEGNANVIFNNTKSKNVRIAYGENNFSKIVAL 75

Query: 243 EKPL 254
           E P+
Sbjct: 76  ETPI 79


>UniRef50_Q9C754 Cluster: Putative uncharacterized protein F12P21.9;
           n=1; Arabidopsis thaliana|Rep: Putative uncharacterized
           protein F12P21.9 - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 97

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 242 RKTATIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVXXTRGTAN 397
           R+TA + D +KE   +VGT+SIF  +     + SP  +  SS+V     +A+
Sbjct: 24  RRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASAS 75


>UniRef50_Q4N3P4 Cluster: Serine/threonine protein phosphatase; n=2;
           Theileria|Rep: Serine/threonine protein phosphatase -
           Theileria parva
          Length = 548

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 171 ALRLIVXSRLIPPIRXSALNWXTPRLRNLNL-MHSSNRDKCS 49
           ++RL+  S L+   +    NW TP LR  NL  + SNR  C+
Sbjct: 83  SIRLVEDSHLVSNFKKEGYNWITPELRKTNLHQYYSNRAICN 124


>UniRef50_A0DBE4 Cluster: Chromosome undetermined scaffold_44, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_44,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1155

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 72  NALNLNSLTEASXSLGQXXESVESDEXKRLNVKLNNARVANLRIAHGDNKL 224
           N +  N L E +  + Q    +++ E +R   KLNN    NL+I + +NKL
Sbjct: 544 NLIQQNKLQEQNVQIQQLTVQIQNMEEQRNEFKLNNQIFQNLKIKYVNNKL 594


>UniRef50_UPI000150A9D8 Cluster: SNF7 family protein; n=1;
           Tetrahymena thermophila SB210|Rep: SNF7 family protein -
           Tetrahymena thermophila SB210
          Length = 251

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 78  LNLNSLTEASXSLGQXXESVESDEXKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 248
           L +NS +E    L      ++ +E  +LN ++NN  VAN+ +    + ++Q   A+K
Sbjct: 179 LGVNS-SEIEDELAAIENELKQEEANKLNTQINNIPVANVNVQQQQHAVAQQQPAQK 234


>UniRef50_Q9MC43 Cluster: Orf89; n=1; Pseudomonas phage D3|Rep:
           Orf89 - Bacteriophage D3
          Length = 134

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = -2

Query: 424 MEXKFLDIKVCGAARXGHITRCAGRVXRFNSIVVYGAQKNAVSAHFVGALFDYVVYSSGF 245
           M   FL ++    A        AG V    S ++ G   NAV   F GA+F +VVY+   
Sbjct: 1   MNWAFLHLEYVNMAEPSGAVAVAGLVGIGASALIPGIDANAVIGAFAGAIF-FVVYAKDI 59

Query: 244 SA 239
           SA
Sbjct: 60  SA 61


>UniRef50_Q4T8A4 Cluster: Chromosome undetermined SCAF7858, whole
           genome shotgun sequence; n=2; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF7858,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 613

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -3

Query: 363 DVLAAXGDLTP*SYTVPRKMLLVPTLLEPSLTMS-SIVAVFRQYTFGSIYYRRVRCANWP 187
           D+L   G L P    + R   L P +L   L    S+++ + Q++ GS+        ++P
Sbjct: 326 DLLRKLGVLPPADLVLGRARPLTPLVLTDLLCFQESLISAWLQFSDGSL----TPLDHYP 381

Query: 186 PGRY*ALRLIVXSRLIPPIRXSALNWXT 103
           PGR+      +  R++   R +A  W T
Sbjct: 382 PGRFTLTATSLEERVVQVQRSAAWKWPT 409


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,244,735
Number of Sequences: 1657284
Number of extensions: 6810685
Number of successful extensions: 14839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14836
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)