Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120804.seq
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.57 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   1.7  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   3.0  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   5.3  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   7.0  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = -2

Query: 310 KNAVSAHFVGALFDYVVYSSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNRLXSSDSTD 131
           K   SA   G L +YV +S  +  +Y+W         R++    L  F   R+      D
Sbjct: 405 KRRASAGNQGGLAEYVGFSPLYELVYVW------NGFRRMTDDELSKFDVERMEPWQDQD 458

Query: 130 SXXCPKLXDASV 95
              C  L  A+V
Sbjct: 459 DDICQALIKATV 470


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 239  CRKTATIDDIVKE-GSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVXXTR 385
            C+    + D +K  G NK    S+ + T+ +    SPN+ +T+SN   T+
Sbjct: 883  CQHFICVKDSIKRLGDNKFEDKSLRICTIPNSIFDSPNSHTTNSNSFFTK 932


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 265 VVYSSGFSAIYIWLNLLSP 209
           VVYSSG +AIY  L+ L+P
Sbjct: 90  VVYSSGLAAIYGLLSYLNP 108


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 291 TLLEPSLTMSSIVAVFRQY 235
           T+L+PS  +S++ +VF+QY
Sbjct: 803 TVLDPSEDISAVTSVFKQY 821


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 309 KMLLVPTLLEPSLTMSSIVAVFRQYTFGSIYYRRVRC 199
           K L+  T L+P L    I  ++ Q +  +I  R++RC
Sbjct: 82  KFLVQSTELKPELQGMDIADIWTQVSKANISERKIRC 118


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 289 FVGALFDYVVYSSGFSAIYI 230
           FVG L  +VV  SGFSA ++
Sbjct: 277 FVGCLVIFVVAFSGFSAYFL 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,979
Number of Sequences: 5004
Number of extensions: 28945
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)