Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120804.seq
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614...    27   9.4  

>07_03_0380 +
           17460078-17460782,17461194-17461252,17461388-17461492,
           17461732-17461867,17461919-17461939
          Length = 341

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 273 LTMSSIVAVFRQYTFGSIYYRRVRCANWPPGRY*ALRLIV 154
           + M ++VAV  +   G +  +RVRC    P R  +L L V
Sbjct: 184 VAMLALVAVHNRDRLGGVERKRVRCFAMAPARCMSLNLAV 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,361
Number of Sequences: 37544
Number of extensions: 185781
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)