Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120804.seq
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)                 28   4.1  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               27   7.2  

>SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)
          Length = 530

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 321 YTTMELNRXTRPAHLVMXPXRAAPQTLISRNLXSMXIVFKGITPTKTV*GXWHVAIRSRQ 500
           YT+ E+N+      + +   R  PQ  I     ++ +V++   P         V IR+RQ
Sbjct: 18  YTSDEVNKVRSVFEITLLLERYMPQKWIYGGRYTLDVVYEVTKPRSATIDSCFVLIRTRQ 77

Query: 501 H 503
           H
Sbjct: 78  H 78


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 242  RKTATIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVXXTRGTANFDIKE 412
            RKT  ++ I K+  N  GT+ +   T  DYG  S N      N    R T    ++E
Sbjct: 1385 RKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHGNRIQERSTKRAALEE 1439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,226
Number of Sequences: 59808
Number of extensions: 218859
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)