Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120804.seq
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30260.1 68414.m03701 expressed protein                             35   0.030
At5g39040.1 68418.m04724 ABC transporter (TAP2) TAP-like ABC tra...    28   3.4  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   3.4  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   3.4  

>At1g30260.1 68414.m03701 expressed protein
          Length = 97

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 242 RKTATIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVXXTRGTAN 397
           R+TA + D +KE   +VGT+SIF  +     + SP  +  SS+V     +A+
Sbjct: 24  RRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASAS 75


>At5g39040.1 68418.m04724 ABC transporter (TAP2) TAP-like ABC
           transporter, Rattus norvegicus, EMBL:AB027520; identical
           to cDNA transporter associated with antigen
           processing-like protein (TAP2); GI:19335723
          Length = 644

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -2

Query: 334 SIVVYGAQKNAVSAHFVGALFDYVVYSSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNR 155
           ++V YGA      +  VGAL  +++YS    +    L+ L   AM+       +    +R
Sbjct: 317 TVVSYGAYLTIYGSMTVGALTSFILYSLTVGSSVSSLSSLYTTAMKAAGASRRVFQILDR 376

Query: 154 LXSSDSTDSXXCP 116
           + SS S+    CP
Sbjct: 377 V-SSMSSSGDKCP 388


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 355 GRVXRFNSIVVYGAQKNAVSAHFVGALFDYVVYSSGFSAIYI 230
           G++   +S+ V+GA ++       GA  DY+V  S    I I
Sbjct: 47  GKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVI 88


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 355 GRVXRFNSIVVYGAQKNAVSAHFVGALFDYVVYSSGFSAIYI 230
           G++   +S+ V+GA ++       GA  DY+V  S    I I
Sbjct: 47  GKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVI 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,059,739
Number of Sequences: 28952
Number of extensions: 150084
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)