Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120803.seq
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q06906 Cluster: Occlusion-derived virus envelope protei...   124   2e-27
UniRef50_Q77K60 Cluster: Odv-e25; n=26; Baculoviridae|Rep: Odv-e...    72   1e-11
UniRef50_Q7T9T8 Cluster: Odv-e25; n=2; Granulovirus|Rep: Odv-e25...    42   0.010
UniRef50_Q9C754 Cluster: Putative uncharacterized protein F12P21...    35   2.0  
UniRef50_UPI000150A002 Cluster: TPR Domain containing protein; n...    33   4.6  
UniRef50_A6H281 Cluster: Probable multidrug resistance protein. ...    33   6.1  

>UniRef50_Q06906 Cluster: Occlusion-derived virus envelope protein
           E25; n=14; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E25 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 229

 Score =  124 bits (299), Expect = 2e-27
 Identities = 66/128 (51%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
 Frame = +1

Query: 256 LSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANF 435
           +SQ+Y+AEKP+S+DDI K+G+ +VG NS+F+GTVYD GV+SPNA   S++VT+TR TANF
Sbjct: 72  VSQVYVAEKPMSMDDIEKQGNARVGANSLFIGTVYDQGVRSPNAPGASNDVTVTRTTANF 131

Query: 436 DIKEFKSMFIVFKGITPTK-TVEDNACCDSKSTAWIVCLIRPQHGGRCSEREVRELRKSN 612
           D+KE+K+MFIV KG+ P K T EDN  C +      VCL+   +    SER    L  S 
Sbjct: 132 DVKEYKNMFIVVKGLPPAKMTKEDNMLCFTVD-GLHVCLV-DANAAPLSERVFARLPPSA 189

Query: 613 LHFWVYTK 636
               VYT+
Sbjct: 190 CTL-VYTR 196



 Score = 65.3 bits (152), Expect = 1e-09
 Identities = 32/53 (60%), Positives = 42/53 (79%), Gaps = 2/53 (3%)
 Frame = +2

Query: 101 WTNA-LNLNSLTEASPSLGQSSESVESD-ENKRLNVKLNNARVANLRIAHGDN 253
           W N  LNLNSLTE+SPSL QSS+SV+ D + ++LNVKL N ++  +R+AHGDN
Sbjct: 18  WYNGKLNLNSLTESSPSLAQSSDSVQVDPQTEQLNVKLGNNKMTYMRVAHGDN 70


>UniRef50_Q77K60 Cluster: Odv-e25; n=26; Baculoviridae|Rep: Odv-e25
           - Helicoverpa armigera NPV
          Length = 230

 Score = 71.7 bits (168), Expect = 1e-11
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
 Frame = +1

Query: 256 LSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSP--------NAASTSSNVT 411
           +S++ +AE+PL+  +I+ EG+  VG N +F+GT+ +    S          +A +S   T
Sbjct: 69  ISKVCVAERPLTYSEIIDEGNRTVGANCVFMGTISEPSQTSTLNQQQQQQQSAGSSLPTT 128

Query: 412 MTRGTANFDIKEFKSMFIVFKGITPTKTVEDNACCDSKSTAWIVCLIRPQ 561
             R TANFDIK+FK+ FIVFK +   K  E       +S   + CLI  Q
Sbjct: 129 ANRVTANFDIKQFKNTFIVFKNVEMIKIKESANMVRYESDGMVYCLIDSQ 178



 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +2

Query: 107 NALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNN*AK-CI 271
           N LN +SL ++S   GQSSES+  +   +L +K N+ R+  +RI HGDN  +K C+
Sbjct: 22  NKLNFDSLNDSS---GQSSESIRENNQGQLTLKFNSPRIKTMRILHGDNKISKVCV 74


>UniRef50_Q7T9T8 Cluster: Odv-e25; n=2; Granulovirus|Rep: Odv-e25 -
           Adoxophyes orana granulovirus (AoGV)
          Length = 217

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 25/74 (33%), Positives = 43/74 (58%)
 Frame = +1

Query: 259 SQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFD 438
           S++   E P+  + I++ G +K G N+I LG + +      N  +++ N   TR + N  
Sbjct: 70  SKIVALETPIRHEQIIEHG-DKAGANTICLGIIKEN--LGSNVGNSNVN---TRFSNNLT 123

Query: 439 IKEFKSMFIVFKGI 480
           IK+FK++FI FKG+
Sbjct: 124 IKQFKNLFITFKGL 137



 Score = 41.1 bits (92), Expect = 0.023
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 101 WTN-ALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNN*AKCI 271
           W N  LN NSL  +S S G   +S++       NV  NN +  N+RIA+G+NN +K +
Sbjct: 19  WVNDKLNANSLNTSSESSG---DSIQFTPEGNANVIFNNTKSKNVRIAYGENNFSKIV 73


>UniRef50_Q9C754 Cluster: Putative uncharacterized protein F12P21.9;
           n=1; Arabidopsis thaliana|Rep: Putative uncharacterized
           protein F12P21.9 - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 97

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +1

Query: 298 DIVKEGSNKVGTNSIFLGTVYDYGVKSP-------NAASTSSNVTMTRGTANFDIKEFKS 456
           D +KE   +VGT+SIF  +     + SP       + +S S++ + T G   F + E + 
Sbjct: 31  DTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASASCTSGLNKFPVTENRG 90

Query: 457 MFIVFK 474
            F VFK
Sbjct: 91  SFPVFK 96


>UniRef50_UPI000150A002 Cluster: TPR Domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: TPR Domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1353

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 107 NALNLNSLTEASPSLGQSSESVESDENKR---LNVKLNNARVANLRIAHGDNN*AKCILP 277
           NALN NS  +++  L   + S  S++NK     N+ LNN   + +++   D+N + C   
Sbjct: 225 NALNANSFKQSNQKLNNKTFSRSSNQNKEKQGQNLSLNNISNSVIQVKKVDSNKSNCDSE 284

Query: 278 KN 283
           +N
Sbjct: 285 RN 286


>UniRef50_A6H281 Cluster: Probable multidrug resistance protein.
           AcrB/AcrD/AcrF family protein; n=1; Flavobacterium
           psychrophilum JIP02/86|Rep: Probable multidrug
           resistance protein. AcrB/AcrD/AcrF family protein -
           Flavobacterium psychrophilum (strain JIP02/86 / ATCC
           49511)
          Length = 1154

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 536 HAVDFESQHALSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFG 378
           H VD  S H +   VLV ++ + T+ +  NSL    A+P  M+    +L+AFG
Sbjct: 340 HQVDELSNHIIFGIVLVMIVLMFTMGLR-NSLFVGAAIPLSMMMAFTILSAFG 391


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,432,231
Number of Sequences: 1657284
Number of extensions: 13440405
Number of successful extensions: 37555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37547
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)