Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120803.seq
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298...    30   1.9  
08_01_0816 + 7935399-7936286,7936842-7936997,7937124-7937335,793...    29   4.3  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   5.7  
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    28   5.7  
11_06_0096 + 20053608-20053631,20053645-20053813,20054329-200545...    28   7.6  

>02_04_0650 +
           24728700-24728725,24729582-24729660,24729802-24729889,
           24730216-24730297,24731083-24731278,24731432-24731816,
           24733332-24734428,24734621-24734886,24735565-24735631,
           24735722-24735772,24736033-24736123,24736239-24736345
          Length = 844

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 495 CRGQCMLRFEVD-SMDCVLDSTP-TRGPLFRTRGARIAQIQLALLGVHEKTEAASAS 659
           C GQ +  FEV  +  C     P TR    RT GAR  Q    + G HE+  A + S
Sbjct: 259 CHGQDLQTFEVPVATTCPQVVAPSTRKDARRTSGARHDQKHEGVSGAHERNRAVACS 315


>08_01_0816 +
           7935399-7936286,7936842-7936997,7937124-7937335,
           7937473-7937665
          Length = 482

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 632 VYTQKCKLDLR--NSRTSRSEQRPPCWGRIKHTIHAVDF 522
           VYT  C  + R  +S+ + +E R   WG      HAVDF
Sbjct: 316 VYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDF 354


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 233 ANWPPGRY*ALRLIVCSRLIPPIRC 159
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 188 CSRLIPPIRC-SALNWATPRLR 126
           CS  +PP+RC   L W+ PR++
Sbjct: 23  CSSRLPPLRCFVGLRWSAPRIQ 44


>11_06_0096 +
           20053608-20053631,20053645-20053813,20054329-20054531,
           20055491-20055747,20055843-20056113
          Length = 307

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 540 CVLDSTPTRGPLFRTRGARI 599
           C +D   TRGP FRT GARI
Sbjct: 59  CKIDDV-TRGPTFRTPGARI 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,076,098
Number of Sequences: 37544
Number of extensions: 377899
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)