Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120803.seq
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)       33   0.27 
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               29   2.5  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_12465| Best HMM Match : Ery_res_leader2 (HMM E-Value=2.7)           28   7.7  

>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
          Length = 340

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -1

Query: 504 VLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAH 325
           ++ S+  R +FE NK+   ++  K C     G+I    G     + +VV G+  NA+   
Sbjct: 203 LMRSYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFP 261

Query: 324 FVGALFDYVVY 292
            V AL DY+ Y
Sbjct: 262 SVKALADYIQY 272


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 256  LSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANF 435
            L + +I  K L+++ I K+  N  GT+ +   T  DYG  S N      N    R T   
Sbjct: 1378 LGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHGNRIQERSTKRA 1435

Query: 436  DIKE 447
             ++E
Sbjct: 1436 ALEE 1439


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 185 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 66
           S ++PP R  S+  W  PR RNL +   S R K  R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195


>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 427 ANFDIKEFKSMFIVFKGITPTKTVEDNACCDSKSTAWIVCLIRPQHGGRC 576
           AN  IK+  +  +VF+G+  +    D A  D + T+    +  P+ G RC
Sbjct: 401 ANIQIKDVGANSLVFEGVRGSSFTGDIAIDDIRLTSCSDQVPEPKEGDRC 450


>SB_12465| Best HMM Match : Ery_res_leader2 (HMM E-Value=2.7)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = -3

Query: 631 CTPRSASWICAIRAPLVR--NSGPRVGV-ESSTQSMLSTSNRNMHCPLQF*WAL 479
           C PR  +W   +R P V   + GP V   + S    + TS     CP    WAL
Sbjct: 599 CCPRFVAWALRVRLPAVTVPSHGPFVSASQLSPFRHMGTSCPPPSCPRSVTWAL 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,064,279
Number of Sequences: 59808
Number of extensions: 440380
Number of successful extensions: 1220
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)