Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120803.seq
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical ...    31   0.96 
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z49074-3|CAA88894.1|  176|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48583-6|CAA88474.1|  176|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    27   8.9  

>AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical
           protein M04F3.5 protein.
          Length = 652

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -3

Query: 628 TPRSASWICAIRAPLVRNSGPRVGVESSTQSMLSTSNRNMHCPLQ 494
           T RS S  C    PL+  +G    +ESS  S++S+S R    PLQ
Sbjct: 275 TTRSISTSCTRNLPLITGNG---NMESSASSVISSSTRYSKPPLQ 316


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRI 238
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL 58


>AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical
           protein R06A10.4 protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 484 PTK-TVEDNACCDSKSTAWIVCLIRPQHGGRCSEREVREL 600
           PT+ T E N+   +KST  I  + R  HG R   REV EL
Sbjct: 335 PTRPTSEYNSMQRTKSTRSIRSVTRSDHGHRVDPREVDEL 374


>Z49074-3|CAA88894.1|  176|Caenorhabditis elegans Hypothetical
           protein ZK971.1 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 282 FFGNIHLAQLLSPCAMRKLATRAL 211
           F GN+ LA   SPC + +LA  A+
Sbjct: 8   FIGNVTLASARSPCLLERLADSAI 31


>Z48583-6|CAA88474.1|  176|Caenorhabditis elegans Hypothetical
           protein ZK971.1 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 282 FFGNIHLAQLLSPCAMRKLATRAL 211
           F GN+ LA   SPC + +LA  A+
Sbjct: 8   FIGNVTLASARSPCLLERLADSAI 31


>U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical
           protein F20A1.4 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 344 KMLLVPTLLEPSLTMSSIDSGFSAIYIWLNY 252
           K+L     L   +T+SSI SGF+ +Y+W ++
Sbjct: 388 KVLDTVDALFSQVTISSICSGFALLYLWYHF 418


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 388 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 483
           A+TS+NVT  + T NFD  +K    +  V  GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 309 FDYVVYR*RFFGNIHLAQLLSPCAMRKL 226
           F+YV Y  R+FG  HL  L   CA + L
Sbjct: 750 FEYVDYVTRYFGISHLLSLYEECATQIL 777


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,598
Number of Sequences: 27780
Number of extensions: 323073
Number of successful extensions: 987
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)