Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120803.seq
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30260.1 68414.m03701 expressed protein                             35   0.055
At2g36810.1 68415.m04514 expressed protein                             29   2.7  
At5g23890.1 68418.m02806 expressed protein weak similarity to SP...    29   3.6  
At4g05240.1 68417.m00791 ubiquitin family protein contains INTER...    28   6.3  
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik...    27   8.4  

>At1g30260.1 68414.m03701 expressed protein
          Length = 97

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +1

Query: 298 DIVKEGSNKVGTNSIFLGTVYDYGVKSP-------NAASTSSNVTMTRGTANFDIKEFKS 456
           D +KE   +VGT+SIF  +     + SP       + +S S++ + T G   F + E + 
Sbjct: 31  DTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASASCTSGLNKFPVTENRG 90

Query: 457 MFIVFK 474
            F VFK
Sbjct: 91  SFPVFK 96


>At2g36810.1 68415.m04514 expressed protein 
          Length = 1071

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 1   CTT*ISLELKL*IKTNHVENRVIDRFARTDLSL 99
           CTT +S+E KL I+T +   +++D+F    LSL
Sbjct: 618 CTTLVSVEPKLTIETRNRVMKILDQFFSISLSL 650


>At5g23890.1 68418.m02806 expressed protein weak similarity to
           SP|P12957 Caldesmon (CDM) {Gallus gallus}
          Length = 946

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 104 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGD 250
           T    ++SLT    S+ QSS+ + SDE K  N + +N +  +  I   D
Sbjct: 120 TKKQEMHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168


>At4g05240.1 68417.m00791 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 197

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 131 TEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNN*AKCILPKN 283
           TE SP L  + E V   ++  + V+ N     ++++ + +NN  +C  P N
Sbjct: 144 TEESPPLNSAKEIVNVQDSP-IMVRSNMKVATSIKVENNNNNNDQCFEPSN 193


>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
           protein GI:12006424 from [Arabidopsis thaliana];
           contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
           alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
           domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
           SAP domain; contains TIGRfam profile TIGR00578:
           ATP-dependent DNA helicase ii, 70 kDa subunit
          Length = 621

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 113 LNLNSLTEASPSLGQSSESVESDENKRLNVK 205
           LN + LTE  PS+GQ  E ++    KR+  K
Sbjct: 234 LNSDELTEFMPSVGQKLEDMKDQLKKRVLAK 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,729
Number of Sequences: 28952
Number of extensions: 298844
Number of successful extensions: 835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)