Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120801.seq
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0145 + 7163922-7165604                                           31   0.81 
02_05_0201 + 26687369-26689228                                         31   1.1  
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    30   1.9  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   7.6  

>02_02_0145 + 7163922-7165604
          Length = 560

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +3

Query: 48  SFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDV 227
           SF A+N +     P   + + N  ++ NL  N+     ++  N F ST   N+I   ++V
Sbjct: 475 SFTAENNQFSGELPTDMSRLANL-TMLNLAGNQLLTTVKIYINNFASTLPSNKIVSKSNV 533

Query: 228 PNIRNVFQGFQTLK*THCAN 287
             I    QG   +   HC N
Sbjct: 534 KEIGLQSQG--KMGFAHCDN 551


>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 486 PPPAKSMPTPATFKVLM*LCKRGFCC 409
           PPP +  P P T++    +CK+GF C
Sbjct: 23  PPPPQPPPPPLTYRHHCKVCKKGFMC 48


>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 319 LPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRL 489
           LP    A   S+TK PR   D  A A R  + TA + PF  +H  +E   +G   GRRR 
Sbjct: 36  LPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRR 94

Query: 490 S 492
           S
Sbjct: 95  S 95


>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
            10839965-10841686,10841776-10842173,10842264-10842318,
            10842989-10843048,10843444-10843540,10844885-10844955,
            10845029-10845109,10846054-10846124,10847951-10848119,
            10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +1

Query: 232  TY-AMYFRAFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRT 408
            TY A+Y R+    +K      A+G     S+ +  D  Q +     +   A  RR ++R+
Sbjct: 912  TYSAVYKRSKTNKHKKNLDSDAYGNGESTSVSNDDDGYQPTDYSPVKPDSATLRRSARRS 971

Query: 409  AAKPPFT*SHENLESSRSGHTLGRR 483
             A    T   +N  SS    T GRR
Sbjct: 972  YAYTDDTTQAKNSYSSHEASTSGRR 996


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,942,467
Number of Sequences: 37544
Number of extensions: 388145
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)