Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120801.seq
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_24844| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 29 4.4
SB_19186| Best HMM Match : SCAN (HMM E-Value=5.9) 28 5.9
SB_51966| Best HMM Match : zf-CCHC (HMM E-Value=0.00038) 28 7.7
SB_35870| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_42797| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05) 28 7.7
SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 266 QINSLRQLRRMDNVPDFHYHTKQTRSNAVRQNFPETNVRTPEGVQN 403
++NSL L D+ +FH ++ S A++ +F N +T E N
Sbjct: 3018 EVNSLSMLSTTDSSFNFHEQSQSVTSGAIKSSFSLKNSQTSEESSN 3063
>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +1
Query: 238 AMYFRAFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAK 417
A+YF R + P HG + LP A++ +LP + + R + ++A+
Sbjct: 538 ALYFEESRAYIEFDRPSTVHGATSATILPAVYLALKMRHLRLPLN--IYISRRTSQSASD 595
Query: 418 PPFT*SHENLESSRSGHTLGRRRL 489
P FT S+ L ++R +L R+
Sbjct: 596 PTFTNSN-RLRTNRRAASLSANRM 618
>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 102 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 236
N N + N NN + +NNR S+++ NR RNND NI
Sbjct: 85 NNSNNNNRNNNSNNNSNNNNRSNNNRNNSSNNNNRSNRNNDSNNI 129
>SB_24844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 200 KQNHS*QRCPQHTQCISGLSDPQINSLRQLRRMDNVPDFHYHTKQT--RSNAVRQNFPET 373
K N Q+C T C + + + + Q+ R DNV H K T +N ++ T
Sbjct: 4 KDNVQQQKCHAKTTCNNKNATQRQRATTQMPRKDNVKQHKCHAKTTCNNTNVTQRQRATT 63
Query: 374 NVRTPEGVQ 400
+ + VQ
Sbjct: 64 QIPRKDNVQ 72
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 268 NKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT 429
N++ P A G+ + SL +T Q + + P+DQ A R AA+P T
Sbjct: 29 NQVSRPRQASGKPRQSSLKTKTSKPQVQEIRKPQDQDKQAARPRDTQAARPKDT 82
>SB_19186| Best HMM Match : SCAN (HMM E-Value=5.9)
Length = 176
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 RFHKCAQRAQCTQPWK--QQISAGLSII*QPVCEHFRHKQNHS*QRCPQ 232
RF K +R Q Q K + + ++II P + RH++NH PQ
Sbjct: 50 RFRKLKRRTQLLQELKTIEDLFQNIAIIRTPSKKRIRHQRNHRESHHPQ 98
>SB_51966| Best HMM Match : zf-CCHC (HMM E-Value=0.00038)
Length = 447
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +1
Query: 325 HQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVYR 504
HQ D +CS+ KLP+D+ R+ + S+E GR +S Y
Sbjct: 58 HQED--ECSKVKLPKDRINILRKFGRCFICLKKGHRSNECFNKDGCSDCRGRHHVSICYE 115
Query: 505 RPLVQDXI-NAINRTGGSYYV 564
R V + + N + T S +V
Sbjct: 116 RERVNENVTNGASVTETSVHV 136
>SB_35870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 313 LSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRS 462
+SL + + +Q +LPR + R + AA PPF S N E +R+
Sbjct: 17 MSLVDILSSAKVNQLQLPRKKNLRLVRAKAKLAAHPPFA-SWRNSEEART 65
>SB_42797| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05)
Length = 668
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +1
Query: 325 HQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVYR 504
HQ D +CS+ KLP+D+ R+ + S+E GR +S Y
Sbjct: 334 HQED--ECSKVKLPKDRINILRKFGRCFICLKKGHRSNECFNKDGCSDCRGRHHVSICYE 391
Query: 505 RPLVQDXI-NAINRTGGSYYV 564
R V + + N + T S +V
Sbjct: 392 RERVNENVTNGASVTETSVHV 412
>SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 367 RDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVYRRP 510
+++RA R C+K +A+P S L SG+T RRL V P
Sbjct: 297 KERRARRRACAKDRSARPSGASSCSALNKD-SGNTKSTRRLGSVRGHP 343
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,630,832
Number of Sequences: 59808
Number of extensions: 449903
Number of successful extensions: 1519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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