Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120801.seq
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81495-5|CAB04059.1| 178|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL110498-2|CAB54468.1| 254|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical pr... 29 3.9
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 29 3.9
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 29 3.9
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 29 3.9
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 29 3.9
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 29 3.9
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 29 3.9
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL132860-6|CAB60526.1| 373|Caenorhabditis elegans Hypothetical ... 28 6.8
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 28 6.8
>Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical
protein F58H1.5 protein.
Length = 323
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 132 LGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 236
+ + +++P Q S+N+FVS SDI I + D +
Sbjct: 28 ISDEKFEPAEQCSSNQFVSISDIGTIYDSEDTQQL 62
>Z81495-5|CAB04059.1| 178|Caenorhabditis elegans Hypothetical
protein F08G2.5 protein.
Length = 178
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 259 RPSNKLIAPIAAHGQRARLSLPH-QTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*S 435
R S+ ++ + + +R + ++ + S++ PR +RA +R SKR + KPP T S
Sbjct: 35 RYSDSTVSTLTSQDRRDTQGCQYPRSSELPISESPAPRARRARKQR-SKRKSVKPPNTSS 93
Query: 436 HENLESS 456
++ + S
Sbjct: 94 DDSSDDS 100
>AL110498-2|CAB54468.1| 254|Caenorhabditis elegans Hypothetical
protein Y64G10A.3 protein.
Length = 254
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 235 YAMYFRAFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTA 411
+ +F A RPSNK++ A+ ++ LP +T +T+L R + H+R C A
Sbjct: 140 FVAHFLANRPSNKILGIAASKVCKSEEELPRET------RTELARLRCGHSRLCGAYVA 192
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 126 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 245
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical
protein F36H2.2 protein.
Length = 441
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 22 SINCILIRPVFLLIIRVF*QALPPVSQMCSTRP 120
S N + + P +LLII AL P+ MC+ RP
Sbjct: 335 SANSLRLSPKYLLIISFLRFALIPMIAMCNVRP 367
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 102 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRN 242
NV NAP+V+N N + Q N + + N R ND PN++N
Sbjct: 611 NVQNAPNVQNASNVQNSQNGQNDKNDPNAQNSQNGQNRQND-PNVQN 656
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 126 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 245
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 126 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 245
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = +1
Query: 208 SLVTTMSPTYAMYFRAFRPSNKLIAPIAAHGQRARLSLPHQTDAI-QCSQTKLPRDQRAH 384
S + + Y F+ P+ L I H +LSLPH A+ + T R++
Sbjct: 754 SAYSRVPSAYPSQFQRQLPNPDLFLDI--HPALQQLSLPHSQSAVFPHNNTLTSRNRSTS 811
Query: 385 ARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVY 501
+ S P + ++ +GH GR +SFVY
Sbjct: 812 SYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIEVSFVY 850
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = +1
Query: 208 SLVTTMSPTYAMYFRAFRPSNKLIAPIAAHGQRARLSLPHQTDAI-QCSQTKLPRDQRAH 384
S + + Y F+ P+ L I H +LSLPH A+ + T R++
Sbjct: 754 SAYSRVPSAYPSQFQRQLPNPDLFLDI--HPALQQLSLPHSQSAVFPHNNTLTSRNRSTS 811
Query: 385 ARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVY 501
+ S P + ++ +GH GR +SFVY
Sbjct: 812 SYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIEVSFVY 850
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = +1
Query: 208 SLVTTMSPTYAMYFRAFRPSNKLIAPIAAHGQRARLSLPHQTDAI-QCSQTKLPRDQRAH 384
S + + Y F+ P+ L I H +LSLPH A+ + T R++
Sbjct: 754 SAYSRVPSAYPSQFQRQLPNPDLFLDI--HPALQQLSLPHSQSAVFPHNNTLTSRNRSTS 811
Query: 385 ARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVY 501
+ S P + ++ +GH GR +SFVY
Sbjct: 812 SYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIEVSFVY 850
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 266 QINSLRQLRRM-DNVPDFHYHTKQTRSNAVRQNFPETNVRTPEGVQNALQQNPRLHNHMR 442
Q NS +Q ++ + + ++H +Q V Q+FP +V+ Q QQN R H+ +
Sbjct: 1100 QFNSGQQATQVHEQQQNQNHHVRQAVQEEVFQSFPRHDVQRHIHGQTNYQQNQRQHSQQQ 1159
>AL132860-6|CAB60526.1| 373|Caenorhabditis elegans Hypothetical
protein Y56A3A.9 protein.
Length = 373
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 235 YAMYFRAFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTA 411
+ +F A RP+NK++ A ++ LP +T +T+L R + H+R C A
Sbjct: 256 FVAHFLANRPTNKILGTAAPKICKSEEELPRET------RTELARLRCGHSRLCGSYVA 308
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 242 CISGLSDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVRQNF 364
CIS S + SL+ + D VPDF + QT S + R F
Sbjct: 70 CISSFSWFSLISLQFIWSSDPVPDFSFPNFQTHSLSTRFQF 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,861
Number of Sequences: 27780
Number of extensions: 333567
Number of successful extensions: 956
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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