Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120801.seq
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase, puta...    31   0.68 
At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferas...    29   2.7  
At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase, puta...    29   3.6  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   4.8  
At5g15260.1 68418.m01787 expressed protein predicted proteins, A...    28   6.3  
At1g70430.1 68414.m08103 protein kinase family protein contains ...    28   6.3  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    27   8.4  
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta...    27   8.4  

>At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 349

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 54  LADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNN--DV 227
           L D+  LL      F  +++    + +   +  PG Q+ NN+F  +    R+  NN  D+
Sbjct: 173 LQDSKSLLCQPATEFLPMIDEVYHKLVEKTKSTPGAQVENNKFCVSVHFRRVDENNWSDL 232

Query: 228 PN-IRNVFQGFQTLK*T 275
            N +R+V + +  L+ T
Sbjct: 233 ANQVRSVMKDYPKLRLT 249


>At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferase 2
           / digalactosyldiacylglycerol synthase 2 (DGD2) identical
           to digalactosyldiacylglycerol synthase (DGD2)
           GI:18141112 [Arabidopsis thaliana]
          Length = 473

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 144 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVF 248
           R++  ++ +  RF+  SD+NR++R +   + R+VF
Sbjct: 375 RHELSWEAATQRFIKVSDLNRLSRADSNLSKRSVF 409


>At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 269

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = +3

Query: 36  PNQAS-FLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRIT 212
           P Q S +  +N  LL      F  V+N    + + N +  PG ++ NN+F ++     + 
Sbjct: 86  PEQGSKYKKENQSLLCQPATEFLPVINEVYKKLVENTQSIPGAKVENNKFCASVHFRCVE 145

Query: 213 RN--NDVPN-IRNVFQGFQTL 266
            N  +D+ + +R+V + +  L
Sbjct: 146 ENKWSDLAHQVRSVLKNYPKL 166


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = +3

Query: 12  LRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRF 182
           L RV       A F ADN  L   T AG TNV     +  LG N   PG   ++  +
Sbjct: 506 LNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLN-MNPGGTFNHGNY 561


>At5g15260.1 68418.m01787 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 234

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 296 MDNVPDFHYHTKQTRSNA 349
           M + PDFH+H+KQ+R+++
Sbjct: 17  MAHSPDFHHHSKQSRTSS 34


>At1g70430.1 68414.m08103 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 594

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 144 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGFQTL 266
           R Q    +  N  +  S+I  + RN DVP  + V Q  QT+
Sbjct: 331 RRQASLVIIPNEEIYNSEIQELNRNGDVPKGKPVIQRSQTM 371


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 182 CEHFRHKQNHS*QR-CPQHTQCIS 250
           C+H RHK   S    CP+HT+C S
Sbjct: 242 CQHPRHKNVSSGPYLCPKHTKCYS 265


>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
           putative similar to SP|O04379 Argonaute protein (AGO1)
           {Arabidopsis thaliana}; contains Pfam profiles PF02170:
           PAZ domain, PF02171: Piwi domain
          Length = 997

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 67  RVF*QALPPVSQMCSTRPVYATLETTDISRAINY 168
           RV  QALP +     TRPVY  +E   I     Y
Sbjct: 442 RVKYQALPAIQTGSDTRPVYLPMELCQIDEGQRY 475


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,073
Number of Sequences: 28952
Number of extensions: 296879
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)