Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120800.seq
         (655 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5; Nucleopoly...   185   7e-46
UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8; N...    93   5e-18
UniRef50_A0EYZ5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q9ZRJ0 Cluster: Retrotransposon Tto1 DNA; n=17; Eukaryo...    35   2.0  
UniRef50_Q62J76 Cluster: ABC transporter, periplasmic substrate-...    33   7.9  
UniRef50_Q6C768 Cluster: Similar to DEHA0A13277g Debaryomyces ha...    33   7.9  

>UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Early 40.9 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 353

 Score =  185 bits (451), Expect = 7e-46
 Identities = 93/129 (72%), Positives = 100/129 (77%)
 Frame = +1

Query: 253 QSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNG 432
           +SALKCIDFDYYG C+K MFCNLQTNLQKCVDQHYAELDVLTRQ+YMS+PLV+LKCYQNG
Sbjct: 69  RSALKCIDFDYYGFCAK-MFCNLQTNLQKCVDQHYAELDVLTRQVYMSDPLVVLKCYQNG 127

Query: 433 AYRLNGQIDLHLNRHIKCIKTQYNDGLIWLDLH*QIXITSAYGRRRVYRQLR*NKPQPRC 612
           AYRLNGQI+LHLNRHIKCIKTQYND    +    QI ITSA G    Y            
Sbjct: 128 AYRLNGQINLHLNRHIKCIKTQYNDEFDLVRFALQIDITSADGVDE-YTDNGVKITTAPL 186

Query: 613 LFNVFFVNV 639
            FNVFFVNV
Sbjct: 187 SFNVFFVNV 195



 Score =  145 bits (351), Expect = 9e-34
 Identities = 68/68 (100%), Positives = 68/68 (100%)
 Frame = +2

Query: 44  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 223
           MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA
Sbjct: 1   MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 60

Query: 224 VTCHIDDD 247
           VTCHIDDD
Sbjct: 61  VTCHIDDD 68


>UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Putative early 40.3 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 355

 Score = 93.1 bits (221), Expect = 5e-18
 Identities = 42/68 (61%), Positives = 51/68 (75%)
 Frame = +2

Query: 44  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 223
           M+R+ +Q+  G LPYITT D+EDRLR++I AKA   F K CFEAVV +  GLFVL+GGAA
Sbjct: 1   MDRVASQIYSGALPYITTMDMEDRLRNRIAAKAGAKFFKACFEAVVADKSGLFVLSGGAA 60

Query: 224 VTCHIDDD 247
             CHI DD
Sbjct: 61  TACHIGDD 68



 Score = 72.5 bits (170), Expect = 8e-12
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
 Frame = +1

Query: 253 QSALKCIDFDYYGLCSKKM-FCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQN 429
           ++ LKC+DFDYY    + +    LQ  LQ CV  +   L  L + + M + L ++KC+QN
Sbjct: 69  RNVLKCLDFDYYNATQEWLQLARLQQRLQACVQDNLEILSRLAQSVRMQDDLFVVKCFQN 128

Query: 430 GAYRLNGQIDLHLNRHIKCIKTQYNDGLIWLDLH*QIXITSAYGRRRVYRQLR*NKPQPR 609
           GA+  NG +   L   ++ ++T +N     L    Q+ + +  G    Y   +    +  
Sbjct: 129 GAFCFNGPVQARLVPCVETVRTSFNGEFDLLRFALQVELKALNGVDE-YVDQKVIVDRGA 187

Query: 610 CLFNVFFVNV 639
            +FNVFFVN+
Sbjct: 188 AVFNVFFVNI 197


>UniRef50_A0EYZ5 Cluster: Putative uncharacterized protein; n=1;
           Ecotropis obliqua NPV|Rep: Putative uncharacterized
           protein - Ecotropis obliqua NPV
          Length = 393

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +2

Query: 80  LPYITTKDIEDRLRDKIVAKAKLAF---IKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 250
           LPYI+ K + D + + I+++    F   + DC E ++       ++ GGAA+  H+ DD+
Sbjct: 14  LPYISKKAVNDAMCNYILSQMPKMFYSEVYDCVERILHRQK--CIVKGGAAIAAHLQDDN 71


>UniRef50_Q9ZRJ0 Cluster: Retrotransposon Tto1 DNA; n=17;
            Eukaryota|Rep: Retrotransposon Tto1 DNA - Nicotiana
            tabacum (Common tobacco)
          Length = 1338

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 87   ILRQRILKIACAIKLWLKQSWHLSKIVSKP*FAKTEVYSC*L--EARL*HAISTTTTTKR 260
            IL  RI++   A KLWL Q  ++ K++ +    KT+  SC L    RL    S +T  +R
Sbjct: 1045 ILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDER 1104

Query: 261  IKMHR 275
             KM R
Sbjct: 1105 RKMER 1109


>UniRef50_Q62J76 Cluster: ABC transporter, periplasmic
           substrate-binding protein; n=57; Burkholderiales|Rep:
           ABC transporter, periplasmic substrate-binding protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 650

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 469 LSANRFDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRR 341
           +  N F+R+VY+L  D ++ L      ++D L   I RN  RR
Sbjct: 289 IGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWARR 331


>UniRef50_Q6C768 Cluster: Similar to DEHA0A13277g Debaryomyces
           hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
           DEHA0A13277g Debaryomyces hansenii - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 152

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 466 SANR-FDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRRI 338
           + NR F R+ Y   FD +  LPT L C F     P  + V  R+
Sbjct: 31  TGNRVFFRIRYSQEFDQLKTLPTPLLCNFYIRNDPFSKTVSERL 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,827,994
Number of Sequences: 1657284
Number of extensions: 10983521
Number of successful extensions: 26553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26543
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)