Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120800.seq
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    29   3.2  
03_02_0068 + 5390004-5390425,5390517-5390949                           29   4.3  
10_01_0117 + 1447741-1449123                                           28   5.6  
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           28   7.5  
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    27   9.9  
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...    27   9.9  

>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 128 IVAKAKLAFIKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 250
           +   A   F+        C  GGL +L G   V C+ID DD
Sbjct: 439 LTTSASFTFLPFLLRCFFCVFGGLLLLAG-LGVLCYIDQDD 478


>03_02_0068 + 5390004-5390425,5390517-5390949
          Length = 284

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 511 NHRCTVFLCILYGGLSANRFDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRRI 338
           +HR  ++  +  G ++ + FD   +R R+DN+ A   DL    DAL  P    VG  +
Sbjct: 61  DHRVVLYDLVCAGSVNPDHFD---FR-RYDNLDAYVDDLLAILDALRIPRCAFVGHSV 114


>10_01_0117 + 1447741-1449123
          Length = 460

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/81 (25%), Positives = 35/81 (43%)
 Frame = +2

Query: 17  VASSSPLFIMERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGG 196
           ++SSSP  +  R   +L L V P        + +RD +V    + + +   EA +   G 
Sbjct: 1   MSSSSPSLLSRRSTAELELPVPPEFRCPISLELMRDPVVGPTGITYDRAGIEAWLLAAGA 60

Query: 197 LFVLTGGAAVTCHIDDDDYKA 259
               T  A+ TC +   D +A
Sbjct: 61  --GKTAAASSTCPVTKGDLRA 79


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 23  SSSPLFIMERLLNQLNLGVLPYITTKDI--EDRLRDKIVAKAKL 148
           SS    ++E +LN +  G+L Y+   D+  ED +  ++ +K KL
Sbjct: 325 SSPTALVVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKL 368


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 247 RLQSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVM 411
           RL  AL    F Y  L S    CNL    ++  D+  +ELD L+ + Y  + L+M
Sbjct: 177 RLGLALNFSVFYYEILNSPDRACNLA---KQAFDEAISELDTLSEESYKDSTLIM 228


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 247 RLQSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVM 411
           RL  AL    F Y  L S    CNL    ++  D+  +ELD L+ + Y  + L+M
Sbjct: 395 RLGLALNFSVFYYEILNSPDRACNLA---KQAFDEAISELDTLSEESYKDSTLIM 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,567
Number of Sequences: 37544
Number of extensions: 307316
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)