Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120800.seq
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.5  
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 29   2.5  
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)                   29   3.3  
SB_50003| Best HMM Match : PAN (HMM E-Value=0.044)                     28   5.8  

>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1021

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 412 LKCYQNGAYRLNGQIDLHLNRHIKCIKTQYNDGLI 516
           L+   NG  R +G++ LH+   +KC K QYN  ++
Sbjct: 545 LQAKDNGRERKHGEMTLHVT--VKCAKYQYNFSIV 577


>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 IDDDDYKAH*NA*ILIITAFAQKKCFATCKLIYKNASTNITLNWTC*RVKFTC 394
           + D++ +   +A  L + AFA KKC  T  +  KNA  +    W C R    C
Sbjct: 350 VGDEELEDFDDAARLSLPAFA-KKCMDTAAVCRKNAGKDWNKRWACRRAFVKC 401


>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
          Length = 218

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = -2

Query: 294 KAVIIKIYAF*CAL*SSSSIW---HVTAAPPVNTNKPPFSQTTASKQSLINANFALATIL 124
           K V    YA   A  S +S+    H+  A P   NKP  S  T   ++    N     +L
Sbjct: 118 KRVTFSKYALLLAAASENSLQELEHLLDADPRYVNKPSSSGQTPLHKAAGKGNIESVRLL 177

Query: 123 SRKRSSISFVVI*GRTPRFS*FNK 52
             + + ++F    GRTP    +NK
Sbjct: 178 LTRGADVNFADKQGRTPMLLAWNK 201


>SB_50003| Best HMM Match : PAN (HMM E-Value=0.044)
          Length = 286

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 633 DKKHVEKTAGLW-FILTQLSVYSSTPVC 553
           D+ HV     LW F+LT  +V SST VC
Sbjct: 164 DRLHVTSARMLWAFLLTATTVASSTEVC 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,346,590
Number of Sequences: 59808
Number of extensions: 375311
Number of successful extensions: 889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)