Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120800.seq
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL161712-19|CAC70143.2|  261|Caenorhabditis elegans Hypothetical...    28   5.0  

>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 228  VTAAPPVNTNKPPFSQTTASKQSLINANFA 139
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 228  VTAAPPVNTNKPPFSQTTASKQSLINANFA 139
            +  +PP NT KPP   TTA++ + + A  A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141


>AL161712-19|CAC70143.2|  261|Caenorhabditis elegans Hypothetical
           protein Y66D12A.24 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -1

Query: 610 SGAVVYFNAVVGILVDARMRLLXQFVSANLTKSNHRCTVFLCILYGGLSANRF 452
           + A+   NA+VG    A+M  L  ++ A+LT S    +V +C++ GGLSA  +
Sbjct: 129 TSAIYIINAIVGSAA-AKMGALNLYM-AHLTLS--LVSVMMCLISGGLSARNW 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,391
Number of Sequences: 27780
Number of extensions: 290762
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)