Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120800.seq
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.0  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   7.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   7.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 161 DCFEAVVCENGGLFVLTGGAAV 226
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 161 DCFEAVVCENGGLFVLTGGAAV 226
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 161 DCFEAVVCENGGLFVLTGGAAV 226
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 278 KSMHFNALCSRRRR 237
           K  HFN   +RRRR
Sbjct: 25  KEFHFNRYLTRRRR 38


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +3

Query: 87  ILRQRILKIACAIKLWLKQSWHLSKIVSKP*FAKTEVYSC*LEARL*HAISTTTT 251
           + +++ + +  AIK W+++  H+ ++V+    A  + Y     A L H ++TT T
Sbjct: 91  LTKKQEMLVRSAIKYWVERHKHIVRLVT----AIGDAYGV---ALLLHMLTTTIT 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,087
Number of Sequences: 438
Number of extensions: 2879
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)