Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120799.seq
         (607 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P34050 Cluster: 43 kDa protein; n=5; Nucleopolyhedrovir...   175   9e-43
UniRef50_Q0N406 Cluster: P43; n=1; Clanis bilineata nucleopolyhe...    35   1.7  
UniRef50_Q2JBX9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q8IEH5 Cluster: Putative uncharacterized protein MAL13P...    33   4.0  
UniRef50_Q4SV18 Cluster: Chromosome undetermined SCAF13816, whol...    33   6.9  
UniRef50_Q14644 Cluster: Ras GTPase-activating protein 3 (GAP1(I...    33   6.9  
UniRef50_P08468 Cluster: Protein PET111, mitochondrial precursor...    32   9.2  

>UniRef50_P34050 Cluster: 43 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: 43 kDa protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 363

 Score =  175 bits (425), Expect = 9e-43
 Identities = 77/82 (93%), Positives = 78/82 (95%)
 Frame = +1

Query: 10  ANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEKLDPYATNINRCRKLLTDFFDYCLPKYYR 189
           ANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEKLD YATNINRCR+LLTDFFDYCLPKYYR
Sbjct: 5   ANSRKPFLFYNEDYYCEKPKRYFHTNKVIFEKLDSYATNINRCRELLTDFFDYCLPKYYR 64

Query: 190 RKNKFALLFRLLEPVIKQTGTS 255
           RKNKF LLFRLLEPVIKQ G S
Sbjct: 65  RKNKFTLLFRLLEPVIKQAGAS 86



 Score =  157 bits (380), Expect = 3e-37
 Identities = 76/104 (73%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
 Frame = +3

Query: 255 SALTAVS-DQSRWLEINQFSAWERRDNQYAHKWLIKVAGADMGXXILXXXXXXXXXXXXC 431
           SALT VS DQ RWLEINQFS WE+RDNQYAHKWLIKV GADMG  IL            C
Sbjct: 86  SALTTVSNDQCRWLEINQFSGWEQRDNQYAHKWLIKVVGADMGQQILFIIKQVTKKFKTC 145

Query: 432 NLGFHNYYKLFRRCLSMLLFKHKEVL*NXXQVILKAAMPVKEXG 563
           NLGFHNYYKLFRRCLS+LLFKHKEV     QVILKAAMPVK+ G
Sbjct: 146 NLGFHNYYKLFRRCLSILLFKHKEVFVQCLQVILKAAMPVKKKG 189


>UniRef50_Q0N406 Cluster: P43; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: P43 - Clanis bilineata
           nucleopolyhedrosis virus
          Length = 366

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
 Frame = +1

Query: 16  SRKPFLFYNEDYYCEKPKRY--FHT----NKVIFEKLDPYATNINRCR--KLLTDFFDYC 171
           S KPFLFYNED +   PKR   F+T    +  I  KL      +++ R  + +  FFDYC
Sbjct: 9   SVKPFLFYNEDTW-RGPKRTNPFYTCPRQHYGISFKLFDTNLKLSKLRPHQRVQYFFDYC 67

Query: 172 LPKYYRRKNKFALL 213
           LP  ++ ++   L+
Sbjct: 68  LPNKFKCRSHMYLM 81


>UniRef50_Q2JBX9 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. CcI3|Rep: Putative uncharacterized protein -
           Frankia sp. (strain CcI3)
          Length = 509

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 171 PAKILPTQKQICAAVSSFRTRNQTNR-NVSALTAVSDQSRWLEINQFSAWERRDNQYAHK 347
           P ++LP   Q+   VS  R++  T R     LTA ++ +  +    + A +RRD++ AH 
Sbjct: 230 PTELLPEAGQLLTLVSYLRSQTPTMRLRRELLTAEAEAAILMGQLVWDASQRRDHRQAHT 289

Query: 348 WLIKVAGA 371
           +L + A A
Sbjct: 290 YLDRAAAA 297


>UniRef50_Q8IEH5 Cluster: Putative uncharacterized protein MAL13P1.70;
            n=5; cellular organisms|Rep: Putative uncharacterized
            protein MAL13P1.70 - Plasmodium falciparum (isolate 3D7)
          Length = 3377

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 52   YCEKPKRYFHTNKVIFEKLDPYATNINRCRKLLTDFFDYCLPKYYRRKNKFALLFRLLEP 231
            + EK   + + NK +F  LD + TN+N   +L  DFF   L  +   KN F  L  ++  
Sbjct: 1461 FLEKENTHNNMNK-LFNILDAF-TNVNTNDELYFDFFMSVLINFVNNKNNFDDL--IINT 1516

Query: 232  VIKQTGTSRR*RRYQTK 282
            +IK+   S+   +Y  K
Sbjct: 1517 LIKEKCVSKSREKYYAK 1533


>UniRef50_Q4SV18 Cluster: Chromosome undetermined SCAF13816, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF13816, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 132

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 34  FYNEDYYCEKPKRYFHTNKVIFEK 105
           FY ED+YCE P+ + H +  IF++
Sbjct: 42  FYGEDFYCEIPRSFRHLSFYIFDR 65


>UniRef50_Q14644 Cluster: Ras GTPase-activating protein 3
           (GAP1(IP4BP)); n=46; Deuterostomia|Rep: Ras
           GTPase-activating protein 3 (GAP1(IP4BP)) - Homo sapiens
           (Human)
          Length = 834

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 34  FYNEDYYCEKPKRYFHTNKVIFEK 105
           FY ED+YCE P+ + H +  IF++
Sbjct: 60  FYGEDFYCEIPRSFRHLSFYIFDR 83


>UniRef50_P08468 Cluster: Protein PET111, mitochondrial precursor;
           n=3; Saccharomyces|Rep: Protein PET111, mitochondrial
           precursor - Saccharomyces cerevisiae (Baker's yeast)
          Length = 800

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 43  EDYYCEKPKRYFHTNKVIFEKLDPYATNINRCRKLLTD-FFDYCLPKYYRRKNKFALLFR 219
           ++ Y    + Y  TN   FE L      I R   +  D  F  C+ +Y+   N+F  LF+
Sbjct: 372 KELYMSVVQAYVSTNN--FENLKVILEKIQRDNDISIDGSFHLCISRYFVNTNQFEGLFK 429

Query: 220 LLEPVIKQTGTSRR*R 267
               V+K T    R R
Sbjct: 430 YYRSVVKTTDGKTRLR 445


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,358,897
Number of Sequences: 1657284
Number of extensions: 10810633
Number of successful extensions: 23898
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23893
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)