Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120799.seq
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)                  29   2.2  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.9  
SB_55249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_49214| Best HMM Match : HSF_DNA-bind (HMM E-Value=2.40042e-42)      27   8.9  

>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 264 TAVSDQSRWLEINQFSAWERRDNQYAHKWLIKVAGAD 374
           T +S  S WL  + F  WE R   + H W+   A +D
Sbjct: 740 TQLSASSHWLNSSSFGPWEARLGNHPHGWVTDPADSD 776


>SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 155 SVSNFLHLLIFVAYGSSFSKITLFV 81
           S S   H+ IFVAYGSS  KI L V
Sbjct: 451 SASKKAHVFIFVAYGSSIRKIMLNV 475


>SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)
          Length = 609

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 31  LFYNEDYYCEKPKRYFHTNKV--IFEKLDPYATNINRC-RKLLTD 156
           L+YN   Y     RYFH   V   +E+L  Y     +C R+LLTD
Sbjct: 476 LYYNSTLYDSLHARYFHWRIVNHRYERLSVYKPTAVQCIRQLLTD 520


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 170  ACQNTTDAKTNLRCCF 217
            ACQ  TD K N +CCF
Sbjct: 4920 ACQKDTDCKNNHKCCF 4935


>SB_55249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 53  IVRSPNVIFIQTK*FLKNSIRTQRILIDAEN 145
           +VR PN+I +    FLKNS+     LID +N
Sbjct: 348 LVRYPNIIQLMWVSFLKNSVYIISELIDGKN 378


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 547 GXAAFKXTCXXFYNTSLCLNNNMDKHRRNSL 455
           G AAF+          L L NN D H RN L
Sbjct: 833 GQAAFESLAQIVNRLHLLLENNQDDHNRNDL 863


>SB_49214| Best HMM Match : HSF_DNA-bind (HMM E-Value=2.40042e-42)
          Length = 284

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 79  ENNVWASHNNNLRCRTERVCENWPR 5
           +N+VW  HN N +C   ++ EN  R
Sbjct: 92  DNDVWEFHNPNFQCGQPQLLENVKR 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,922,769
Number of Sequences: 59808
Number of extensions: 351102
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)