Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120799.seq
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27020.1 68417.m03886 expressed protein gene F20P5.12 of BAC ...    28   4.2  
At1g51520.2 68414.m05799 expressed protein contains a weak hit t...    28   4.2  
At1g51520.1 68414.m05798 expressed protein contains a weak hit t...    28   4.2  
At5g09800.1 68418.m01134 U-box domain-containing protein low sim...    27   9.6  

>At4g27020.1 68417.m03886 expressed protein gene F20P5.12 of BAC
           F20P5 from Arabidopsis thalianachromosome 1,
           PID:g2194125
          Length = 523

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 124 SLRTDRVFQKLLCLYENNVWASHNN 50
           S+R D V  K  C YEN  W   NN
Sbjct: 65  SVRNDAVEWKGACFYENKAWLELNN 89


>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
           PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 513

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 28  FLFYN-EDYYCEKPKRYFHTNKVIFEKLDPYATNINRCRK 144
           FLF N ED +    KR F  N   FE  +P+    N C +
Sbjct: 144 FLFTNDEDPFANSHKRSFSANDACFESEEPWFGGGNGCHQ 183


>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
           PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 414

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 28  FLFYN-EDYYCEKPKRYFHTNKVIFEKLDPYATNINRCRK 144
           FLF N ED +    KR F  N   FE  +P+    N C +
Sbjct: 144 FLFTNDEDPFANSHKRSFSANDACFESEEPWFGGGNGCHQ 183


>At5g09800.1 68418.m01134 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 409

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 171 PAKILPTQKQICAAVSSFRTRNQTNRNVSALTAVSDQSR 287
           P    PT+ +I AA+  FR  N     +      SD++R
Sbjct: 90  PESDTPTRDEINAAIERFRIENDARSKILRFARESDENR 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,261
Number of Sequences: 28952
Number of extensions: 238393
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)