Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120798.seq
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    29   3.4  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    28   5.9  

>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 538 ITAFLLLXSLPGFSWGLLQYL 600
           +T +L L +L GFS GLLQ+L
Sbjct: 83  VTPYLFLPALAGFSLGLLQFL 103


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 539 LQHFYYXY-HYLVLAGGYYNIY 601
           L+ FY+ Y HY V A  Y NIY
Sbjct: 77  LKEFYFEYQHYYVAAASYNNIY 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,098
Number of Sequences: 27780
Number of extensions: 165845
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)