Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120797.seq
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   106   2e-24
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.84 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.4  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   5.9  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   5.9  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    25   7.8  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.8  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  106 bits (255), Expect = 2e-24
 Identities = 49/75 (65%), Positives = 61/75 (81%)
 Frame = +2

Query: 203 SQETEAACKGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXT 382
           +++ +   KGP     ++L+ITTRKTP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQ T
Sbjct: 43  AKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQIT 102

Query: 383 SINIEPGVEVXVTXA 427
           SI+IEPGVEV VT A
Sbjct: 103 SIHIEPGVEVEVTIA 117



 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 37/52 (71%), Positives = 45/52 (86%)
 Frame = +3

Query: 99  EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 254
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTK 59


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 81   VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 230
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 72  AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 170
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 320 MRIHKRVIDLHSPSEIVKQXTSINIEPGV 406
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 277 NSLW*RFKDLGSFSDENPQESDRPTL 354
           N+ W RFK+ G + DE+  E + P+L
Sbjct: 35  NNEW-RFKNAGEYFDEDNNEEEYPSL 59


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 351 CRSITLLWILI*KRSQVFEPSPQ 283
           C +  L W+   KRSQ   PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 369 TISEGECRSITLLWILI*KRSQVFEPSPQGVLRVVI 262
           TI  GE   + L W L    S +   +PQ V+++V+
Sbjct: 497 TIGTGEFGKVKLGWPLPKANSTIHRSTPQVVIKIVL 532


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 292 FTTRSFTGGDTQDLVGMRTGPFTRSFCFLAPLIRSAQTFSSERTLREV 149
           +T  +  GGD+ D+V +  GP  ++   +     SA   +S R + E+
Sbjct: 16  YTRYTANGGDSNDVVALLVGPIVQTLS-IPSSTSSAPLVTSVREILEL 62


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 272 RKTPCGEGSKTWDRFQM 322
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,404
Number of Sequences: 5004
Number of extensions: 38595
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)