Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120797.seq
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 102 2e-22
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 101 3e-22
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 101 3e-22
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 36 0.017
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 32 0.28
07_01_0344 - 2490700-2493249 30 0.85
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 28 4.5
06_03_1366 + 29601921-29602646 27 7.9
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 102 bits (244), Expect = 2e-22
Identities = 46/68 (67%), Positives = 55/68 (80%)
Frame = +2
Query: 227 KGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXTSINIEPGV 406
KGP +VL ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQ TSI IEPGV
Sbjct: 60 KGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGV 119
Query: 407 EVXVTXAD 430
EV VT +D
Sbjct: 120 EVEVTISD 127
Score = 70.5 bits (165), Expect = 6e-13
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +3
Query: 69 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 248
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 249 TK 254
TK
Sbjct: 67 TK 68
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 101 bits (242), Expect = 3e-22
Identities = 47/76 (61%), Positives = 57/76 (75%)
Frame = +2
Query: 203 SQETEAACKGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXT 382
+++ + KGP +VL ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQ T
Sbjct: 54 AKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQIT 113
Query: 383 SINIEPGVEVXVTXAD 430
SI IEPGVEV VT AD
Sbjct: 114 SITIEPGVEVEVTIAD 129
Score = 74.5 bits (175), Expect = 4e-14
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +3
Query: 69 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 248
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 249 TK 254
TK
Sbjct: 69 TK 70
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 101 bits (242), Expect = 3e-22
Identities = 47/76 (61%), Positives = 57/76 (75%)
Frame = +2
Query: 203 SQETEAACKGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXT 382
+++ + KGP +VL ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQ T
Sbjct: 51 AKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQIT 110
Query: 383 SINIEPGVEVXVTXAD 430
SI IEPGVEV VT AD
Sbjct: 111 SITIEPGVEVEVTIAD 126
Score = 73.7 bits (173), Expect = 7e-14
Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
Frame = +3
Query: 66 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 233
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 234 PVRMPTK 254
PVR+PTK
Sbjct: 61 PVRIPTK 67
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 35.9 bits (79), Expect = 0.017
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 117 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 254
++P +IRI L S V +E C +I AK + GPV +PTK
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTK 374
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 161 CALAREGLC*PNQWSQETEAACKGPSPHANQVLRIT 268
C LA EGL ++W++ A +GPSP + R T
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSPLKQPLTRTT 190
>07_01_0344 - 2490700-2493249
Length = 849
Score = 30.3 bits (65), Expect = 0.85
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 133 RWIGETSAWGFSMSLPDTTAAA 68
RWIG++S F++SLP T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/74 (27%), Positives = 25/74 (33%)
Frame = +2
Query: 134 HQDHSYFTQCALAREGLC*PNQWSQETEAACKGPSPHANQVLRITTRKTPCGEGSKTWDR 313
H S +CAL R+G +W ET C G P +L G D
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPAMAIAVGRAFPDA 70
Query: 314 FQMRIHKRVIDLHS 355
+ID HS
Sbjct: 71 IHRLCRWHIIDGHS 84
>06_03_1366 + 29601921-29602646
Length = 241
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 453 FIGGSAYASAMVTXTSTPGSMLIEVICFTISEGEC 349
F+G ASA+ + + PG+ + + +S+GEC
Sbjct: 21 FLGSRLPASALASWGTAPGTKTLLNLFLELSQGEC 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,450
Number of Sequences: 37544
Number of extensions: 297312
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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