Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120797.seq
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   6e-28
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.1  
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)                      27   8.0  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               27   8.0  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  120 bits (289), Expect = 6e-28
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +2

Query: 203 SQETEAACKGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXT 382
           ++E +   KGP     + LRITTRKTPCGEGSKTWDR++MRIHKR+IDLHSPSEIVKQ T
Sbjct: 24  AKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRIHKRLIDLHSPSEIVKQIT 83

Query: 383 SINIEPGVEVXVTXADA 433
           SI+IEPGVEV VT ADA
Sbjct: 84  SISIEPGVEVEVTIADA 100



 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 24/35 (68%), Positives = 29/35 (82%), Gaps = 2/35 (5%)
 Frame = +3

Query: 156 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTK 254
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTK 40


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 90  KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 191
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
          Length = 607

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 24/99 (24%), Positives = 40/99 (40%)
 Frame = +2

Query: 32  SCLSRPEFNKQHGSRCSVRQRH*ETPGRGLPYPPHQDHSYFTQCALAREGLC*PNQWSQE 211
           +C S+P  + +  S+ S RQ++  TP   LP    +  S+FT    +      P   +  
Sbjct: 199 TCNSKPSGDSKSSSQSS-RQKN--TPNSKLPVGDSKWSSHFTSRQKSASHTSIPPPTASS 255

Query: 212 TEAACKGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRI 328
           + +   G +P  NQ      R T   +   T  R   R+
Sbjct: 256 SNSELLGKAPPTNQGKGKALRATSSEKSLPTASRVNSRV 294


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 57  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 179
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 308 PRSLNLHHKEFYGW*YAGLGWHADWALYTQLLFLGS 201
           P     HHK FYG  Y  + +H   A + Q L  G+
Sbjct: 670 PDYTGFHHKTFYGSAYVAIAYHN--AAFVQYLLSGT 703


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,972,983
Number of Sequences: 59808
Number of extensions: 328484
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)