Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120797.seq
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   112   1e-25
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    27   7.0  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   7.0  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    27   7.0  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   7.0  
AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  112 bits (270), Expect = 1e-25
 Identities = 49/68 (72%), Positives = 60/68 (88%)
 Frame = +2

Query: 227 KGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXTSINIEPGV 406
           KGP     +VLRITTRKTPCGEGSKTWDRFQMRIHKR+I+LH+P+E+++Q TSI+IEPGV
Sbjct: 50  KGPIRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRLINLHAPAEVLRQITSISIEPGV 109

Query: 407 EVXVTXAD 430
           ++ VT AD
Sbjct: 110 DIEVTRAD 117



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +3

Query: 129 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 254
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTK 58


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 102  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 212
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 378 ICFTISEGECRSITLLWILI*KRSQVFEPSPQGVLRVVIRRTWLA 244
           I + +S  EC ++ ++       ++V+       LRV ++R+W+A
Sbjct: 473 IVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIA 517


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 169 ERTL-REVRVILMRWIGETSAWGFSMSLPDTTA 74
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 378 ICFTISEGECRSITLLWILI*KRSQVFEPSPQGVLRVVIRRTWLA 244
           I + +S  EC ++ ++       ++V+       LRV ++R+W+A
Sbjct: 473 IVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIA 517


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  MAAAVVSGKDIEKPQAEVSPIH 131
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  MAAAVVSGKDIEKPQAEVSPIH 131
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical
           protein Y56A3A.2 protein.
          Length = 616

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 315 KRSQVFEPSPQGVLRVVIRRTWLACGL 235
           KR   FE S +   R+++ R W ACG+
Sbjct: 75  KRDIFFEESRRLKCRILVIRMWFACGV 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,862,429
Number of Sequences: 27780
Number of extensions: 233272
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)