Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120797.seq
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 103 8e-23
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 103 8e-23
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 103 8e-23
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 103 8e-23
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 39 0.002
At1g20530.1 68414.m02558 hypothetical protein 28 2.8
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 28 3.7
At3g06960.2 68416.m00827 expressed protein 28 3.7
At3g06960.1 68416.m00826 expressed protein 28 3.7
At5g03390.1 68418.m00292 expressed protein contains Pfam profile... 27 5.0
At3g22400.1 68416.m02826 lipoxygenase, putative similar to lipox... 27 6.5
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 8.7
At2g24560.1 68415.m02933 GDSL-motif lipase/hydrolase family prot... 27 8.7
At1g28050.1 68414.m03434 zinc finger (B-box type) family protein 27 8.7
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 103 bits (246), Expect = 8e-23
Identities = 46/69 (66%), Positives = 55/69 (79%)
Frame = +2
Query: 227 KGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXTSINIEPGV 406
KGP +VL+ITTRK PCGEG+ TWDRF++R+HKRVIDL S ++VKQ TSI IEPGV
Sbjct: 56 KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 115
Query: 407 EVXVTXADA 433
EV VT AD+
Sbjct: 116 EVEVTIADS 124
Score = 74.5 bits (175), Expect = 3e-14
Identities = 32/43 (74%), Positives = 40/43 (93%)
Frame = +3
Query: 126 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 254
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 64
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 103 bits (246), Expect = 8e-23
Identities = 46/69 (66%), Positives = 55/69 (79%)
Frame = +2
Query: 227 KGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXTSINIEPGV 406
KGP +VL+ITTRK PCGEG+ TWDRF++R+HKRVIDL S ++VKQ TSI IEPGV
Sbjct: 54 KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 113
Query: 407 EVXVTXADA 433
EV VT AD+
Sbjct: 114 EVEVTIADS 122
Score = 76.6 bits (180), Expect = 8e-15
Identities = 33/49 (67%), Positives = 43/49 (87%)
Frame = +3
Query: 108 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 254
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 62
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 103 bits (246), Expect = 8e-23
Identities = 46/69 (66%), Positives = 55/69 (79%)
Frame = +2
Query: 227 KGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXTSINIEPGV 406
KGP +VL+ITTRK PCGEG+ TWDRF++R+HKRVIDL S ++VKQ TSI IEPGV
Sbjct: 54 KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 113
Query: 407 EVXVTXADA 433
EV VT AD+
Sbjct: 114 EVEVTIADS 122
Score = 76.6 bits (180), Expect = 8e-15
Identities = 33/49 (67%), Positives = 43/49 (87%)
Frame = +3
Query: 108 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 254
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 62
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 103 bits (246), Expect = 8e-23
Identities = 46/69 (66%), Positives = 55/69 (79%)
Frame = +2
Query: 227 KGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQXTSINIEPGV 406
KGP +VL+ITTRK PCGEG+ TWDRF++R+HKRVIDL S ++VKQ TSI IEPGV
Sbjct: 56 KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 115
Query: 407 EVXVTXADA 433
EV VT AD+
Sbjct: 116 EVEVTIADS 124
Score = 74.5 bits (175), Expect = 3e-14
Identities = 32/43 (74%), Positives = 40/43 (93%)
Frame = +3
Query: 126 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 254
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 64
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 69 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 248
A+ V S I +++P +IRI L S V +E C +++ A+ + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
Query: 249 TK 254
TK
Sbjct: 133 TK 134
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 203 SQETEAACKGPSPHANQVLRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQX 379
++ T A GP P + K+P + F++R H+R+ID L+ ++ +
Sbjct: 118 ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSL 176
Query: 380 TSINIEPGVEVXV 418
+++ GV+V V
Sbjct: 177 MQLDLPAGVDVEV 189
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 347 GRSLSCGFSSENDPRSLNLHHKEFY 273
G +C S + P SLNL+H FY
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFY 130
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 359 RESVGRSLSCGFSSENDPRSLNLH 288
+E +G SLS GFS ++P +NL+
Sbjct: 5 KEDLGLSLSLGFSQNHNPLQMNLN 28
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 136 MRWIGETSAWGFSMSLPDT 80
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 136 MRWIGETSAWGFSMSLPDT 80
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At5g03390.1 68418.m00292 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 373
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 166 ARSRRSVLT*SMEPRNRSCV*RAQSACQPSPAYHHP*NSLW*RFK 300
A++R S ++ S P + CV +S+ P + P +S W R K
Sbjct: 126 AKARISSISLSASPNQQDCVLAVKSSSSPFLSLWRPGDSAWTRIK 170
>At3g22400.1 68416.m02826 lipoxygenase, putative similar to
lipoxygenase gi:8649004 [Prunus dulcis], gi:1495802 and
gi:1495804 from [Solanum tuberosum]
Length = 886
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 5 TRLNNF*LKSCLSRPEFNKQHGSRCSVRQRH*ETPGRGL 121
+RL F KSCL ++ QH S+R H E+ GL
Sbjct: 402 SRLQEFPPKSCLDSAKYGNQHS---SIRTEHIESNMNGL 437
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -3
Query: 176 LERAH--IA*SKSDPDAVDRGDLCL 108
++R H +A +K DPD+V RG +CL
Sbjct: 691 IQRLHEKMAVTKLDPDSVRRGSICL 715
>At2g24560.1 68415.m02933 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL3 GI:15054386 from
[Arabidopsis thaliana]; contains Pfam profile PF00657:
GDSL-like Lipase/Acylhydrolase
Length = 360
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 63 CLLNSGRDKQLFNQKLFSLVP 1
CL RD L+NQKL +L+P
Sbjct: 245 CLEQENRDSVLYNQKLQNLLP 265
>At1g28050.1 68414.m03434 zinc finger (B-box type) family protein
Length = 433
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 197 QWSQETEAACKGPSPHANQVLRITTRKTPCGEGSKTWD 310
+WS++ E G NQ TT G+ S+ WD
Sbjct: 228 KWSRDVEEINGGGGGGVNQQWNATTTNPSGGQSSQIWD 265
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,344,811
Number of Sequences: 28952
Number of extensions: 220738
Number of successful extensions: 504
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -