Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120796.seq
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961...    29   2.4  
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    28   4.1  
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273...    27   7.2  

>02_04_0347 +
           22193708-22193720,22194317-22194390,22195388-22196132,
           22196203-22196417,22196505-22196786,22196870-22196998,
           22197088-22197267,22197538-22197645,22197888-22198094
          Length = 650

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = -3

Query: 372 PXKPKRTTASRPETGRAXXTYPCGLRIGPT-----TSGYANYNFGV*FLLHDVIPSPWKS 208
           P    R  AS+P+TG      PCGL +G +     T G  + NF +  +  ++     K 
Sbjct: 171 PYSIHRMNASKPDTGDFTIDIPCGLIVGSSVTIIGTPGSLSGNFRIDLVGTELPGGSGKP 230

Query: 207 IVNIC*VRISFEKL 166
           IV    VR++ ++L
Sbjct: 231 IVLHYDVRLTSDEL 244


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 131 RCTGVRIPRAGTNFSNEIRT*QMFTIDFHGE 223
           RCTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>02_01_0377 +
           2728892-2729187,2729483-2729544,2730516-2730570,
           2730784-2730858,2730980-2731054,2731155-2731202,
           2731548-2732357,2732450-2732498,2733157-2733266,
           2733381-2733488,2733920-2733980
          Length = 582

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 366 KPKRTTASRPETGRAXXTYPCGLRIGPTTSGY 271
           +P+R  + RPE G +    PCG R    T+ +
Sbjct: 69  RPERLASDRPEEGASAAAQPCGGRSESPTARF 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,750,753
Number of Sequences: 37544
Number of extensions: 229742
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)