Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120796.seq
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)                29   2.4  
SB_55712| Best HMM Match : RnaseH (HMM E-Value=0.021)                  27   7.4  
SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_14078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)                  27   9.8  

>SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)
          Length = 288

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 241 ITRCYSFTVEVNREHLLSTYFIRKIGTRPRDSNTGASQQRMHRT 110
           +TR +     V R HL  T  IR   TR R   T  S+ R+ RT
Sbjct: 213 VTRTHLTRTRVTRTHLTRTRVIRTRVTRTRTIRTHLSRTRVTRT 256


>SB_55712| Best HMM Match : RnaseH (HMM E-Value=0.021)
          Length = 401

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 207 LTST-VKE*HRVIKIKPQNYNLRNHWW 284
           LT T +K   R+I I+PQ+YNL    W
Sbjct: 31  LTKTDIKNSFRIIPIRPQDYNLLGMQW 57


>SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 207 LTST-VKE*HRVIKIKPQNYNLRNHWW 284
           LT T +K   R+I ++PQ+YNL    W
Sbjct: 116 LTKTDIKNAFRIIPVRPQDYNLLGMQW 142


>SB_14078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 207 LTST-VKE*HRVIKIKPQNYNLRNHWW 284
           LT T +K   R+I ++PQ+YNL    W
Sbjct: 62  LTKTDIKNAFRIIPVRPQDYNLLGMQW 88


>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
          Length = 944

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 207 LTST-VKE*HRVIKIKPQNYNLRNHWW 284
           LT T +K   R+I ++PQ+YNL    W
Sbjct: 512 LTKTDIKNAFRIIPVRPQDYNLLGMQW 538


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,713,011
Number of Sequences: 59808
Number of extensions: 267717
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)