Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120796.seq
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical...    27   6.5  
AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical
           protein F46E10.11 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 228 IPSPWKSIVNIC*VRISFEKLVPARGIRTPVHRNNECTGR 109
           I S W+ I   C V  ++E  +P    R+PV+ N  C GR
Sbjct: 79  IRSNWRCINGCCRVP-NYEPTLPPTTTRSPVNPNPVCGGR 117


>AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical
           protein Y102A5D.1 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 337 RNRQGGXHLPVRTQNRSYHQWLRK 266
           ++  GG HLP+RT NRS    L++
Sbjct: 304 KSNTGGCHLPLRTWNRSDETKLKR 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,691,198
Number of Sequences: 27780
Number of extensions: 198049
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)