Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120795.seq
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    26   0.32 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 434 LNSCFISFSSSVWCTVGSVCSTYR 363
           ++SC   FSSS WC   +  S  R
Sbjct: 135 VSSCHQGFSSSTWCNYSAYSSASR 158


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 460 LLHGFRAHQARARDVLAHCSQN*SVQFVSRFRR 558
           L  G+R   + A D   HC +  + +F ++ RR
Sbjct: 588 LQRGYRVEYSAASDAFTHCPEGFN-EFYNQRRR 619


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 460 LLHGFRAHQARARDVLAHCSQN*SVQFVSRFRR 558
           L  G+R   + A D   HC +  + +F ++ RR
Sbjct: 821 LQRGYRVEYSAASDAFTHCPEGFN-EFYNQRRR 852



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 325 TSRRVKFVVWPILNRFXSAY 266
           T++   FVVWP++    + Y
Sbjct: 225 TAQASSFVVWPLVENNPTLY 244


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 460 LLHGFRAHQARARDVLAHCSQN*SVQFVSRFRR 558
           L  G+R   + A D   HC +  + +F ++ RR
Sbjct: 821 LQRGYRVEYSAASDAFTHCPEGFN-EFYNQRRR 852



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 325 TSRRVKFVVWPILNRFXSAY 266
           T++   FVVWP++    + Y
Sbjct: 225 TAQASSFVVWPLVENNPTLY 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,765
Number of Sequences: 336
Number of extensions: 2924
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)