Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120795.seq
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    28   1.0  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   5.5  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   7.3  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 648 SWPEI*TAPIFNLSHLNLLN*IYLQRRVTNSTKARNK 538
           +W  +   PIF + H+ + N IYL + V N   A  K
Sbjct: 368 AWIPLRHPPIFYIGHVPVFNDIYLTKIVKNKATANKK 404


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 121 ELQNWFYEHVLPQCTARQSALSLLQDA 201
           E+QNW++EH    C     A +  Q+A
Sbjct: 190 EIQNWYFEHHTELCLLIHHAEARAQEA 216


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 295 PILNRFXSAYSSVVPHRNGPRRERN 221
           P L+RF  + S+ + H+NG  R+ N
Sbjct: 8   PALSRFGKSISASLHHQNGSSRDDN 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,896
Number of Sequences: 5004
Number of extensions: 47595
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)