Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120795.seq
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    31   0.61 
02_04_0196 + 20835495-20837255                                         30   1.9  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   5.7  
04_04_0762 - 27844427-27844542,27844876-27844912,27845436-278458...    28   5.7  

>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 399 VVHGGLGLQHVPHLVVVRRGRNSEK 325
           VV GGLG QH+PH  + R  + ++K
Sbjct: 241 VVQGGLGFQHIPHQPLQRNKKTTKK 265


>02_04_0196 + 20835495-20837255
          Length = 586

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/22 (63%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = -1

Query: 222 IKLYCRLGVLEQAQRRL-SGGA 160
           +KLYC LG+L++A+R L SGGA
Sbjct: 120 LKLYCSLGLLDRARRVLYSGGA 141


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 146 CS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTC 15
           C+   F SS AL+IL    N   P + S  + VC   G+  L C
Sbjct: 638 CNSMSFMSSIALIILLVNPNLYRPAIRSYALSVCTAVGMFALLC 681


>04_04_0762 -
           27844427-27844542,27844876-27844912,27845436-27845867,
           27846036-27846740
          Length = 429

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 387 GLGLQHVPHLVVVRRGRNSEK 325
           GLG QH+PH  + R  +N++K
Sbjct: 128 GLGFQHIPHQPLQRNKKNTKK 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,557,564
Number of Sequences: 37544
Number of extensions: 367594
Number of successful extensions: 948
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)